| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hlac_0334 |
|---|
| Symbol | |
|---|
| ID | 7399724 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halorubrum lacusprofundi ATCC 49239 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_012029 |
|---|
| Strand | - |
|---|
| Start bp | 357302 |
|---|
| End bp | 357850 |
|---|
| Gene Length | 549 bp |
|---|
| Protein Length | 182 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 643707396 |
|---|
| Product | archaemetzincin-like protein |
|---|
| Protein accession | YP_002565008 |
|---|
| Protein GI | 222478771 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1913] Predicted Zn-dependent proteases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.567826 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.0385783 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATTGCGG CGGTCAAAAG CTGTTCCATG CTCGTGGACA TCGTCCCAGT CGGGGAGGTC
ACCCCCCGCG TGAAACGCGA GGCCTCCGCC GCGCTCCGTT CGGTATACGA CTGCGACGTG
ACCGTCCACG ACGATCAGCC GATCCCCGGG ACGGCCTACG ACGAAGGCCG CGATCAGTAC
CGCGCCGAGG ACCTCATCGA AACGGTCGGC CGCGTCGGCG GCGGCGAAAA GAATATCGGG
ATCACTCCGC GCGACCTCTA CTACCGCCGT CGGAACTACG TGTTTGGGCT CGCCTACCTC
AACGGTAACG GCTCCGTGAT TTCGACCCAC CGGCTTCGCA CCTCCTCCGA CGGGGGCGTC
TCGACCAAGC CCGCGGTCGA CGTGTTCGCC GACCGCGTCC GCAAGGAGGT CGTCCACGAG
ATTGGCCACA CGCTCGGACT AGAGCACTGC GACAACAGCA AGTGCGTCAT GTCCTTCTCG
CCGACCGTTC GCGAGGTCGA CGTGAAAGAG GAGAACCTCT GTGGAACCTG TTCGCGACTC
GTGCGGTAG
|
|---|
| Protein sequence | MIAAVKSCSM LVDIVPVGEV TPRVKREASA ALRSVYDCDV TVHDDQPIPG TAYDEGRDQY
RAEDLIETVG RVGGGEKNIG ITPRDLYYRR RNYVFGLAYL NGNGSVISTH RLRTSSDGGV
STKPAVDVFA DRVRKEVVHE IGHTLGLEHC DNSKCVMSFS PTVREVDVKE ENLCGTCSRL
VR
|
|---|
| |