| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hlac_0288 |
|---|
| Symbol | |
|---|
| ID | 7401214 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halorubrum lacusprofundi ATCC 49239 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_012029 |
|---|
| Strand | + |
|---|
| Start bp | 310553 |
|---|
| End bp | 311950 |
|---|
| Gene Length | 1398 bp |
|---|
| Protein Length | 465 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 643707351 |
|---|
| Product | DNA photolyase FAD-binding |
|---|
| Protein accession | YP_002564963 |
|---|
| Protein GI | 222478726 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0415] Deoxyribodipyrimidine photolyase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.155544 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.119697 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGCTAT TTTGGCACCG ACGCGATCCG CGCACCCGGG ACAACGTCGG ACTCGCGGCG
GCCGCACGGA CGGGGACCGT CGTCCCCGTC TTCGTCTACG ACACCGACCT GTTCGGGACG
ATGGGTGCAC GCCAGCGGGC CTTCTTCCTC CGACACGTAA AGCGACTGAA GGAGCGCTAC
CGAGAGTTCG GAAGCGACCT CGTCGTCCGC GCGGGCGACC CGGAGAAGGT CCTCGTCGAT
CTCGCCGACG AGTACGACGC GGAGGCGGTC TTCTACAACG AGTACTACCG TCCCGCGAGG
CGGAACCGCC AGCGGGCCGT CGAGGGGGCG CTCGAGGGCT TCGGTGTCGA AACGAATGCA
CGGACCGATG CCGTGTTAGT CGATCCCGGC CGGCTGGAGG AGCGCTACGC GAATCACGGT
CGATTTCACG ATGAGTGGGA GACCGTCCCT AAGCCCGAGC CGTCCCCGGA ACCAGACGCG
GACGCGCTCG TGAACATGCG CGACGAAAAA ACGGTCTCTG AGATTGACCC CGACATCGAC
CCCGACATCG ACCTGCCGGC GACCGGCTAC CGGGCCGCAC GCGAGCGGTT CGACGGCTTC
CTCGAACACG GAATCCGGTC GTACGCCGAC ACGCGCGACG ACCTTGCCCG GGCCGTCGAG
GCGCCGACGC ACGCGGTCTC GCGAATGTCG CCGTACCTCG CAACGGGGGC GATCGGGATC
CGGGAGATGT GGGCGGACGC GACCGACGCG TTCGAGGCGG CGACGGGCGA CGAGCGCCGC
AACGTCGACA AGTACCGCGA CGAGCTGTCG TGGCGCGAGC AGATGTACCA CCTGCTGTAC
TACACCCCCG ATCTGGCCGT CGCGAACTAC AAATCGTTCC CGAACGAGAT CGCGTGGCGC
GAGGACGACA CGGCGTTCGA GGCGTGGACG CGCGGCGAGA CCGGCTACCC GCTCGTCGAC
GCCGGGATGC GCCAGCTGAA CGCGGAGGGG TACGTCCACA ACCGCCCGCG ACAGGTGGTC
GCGAGCTTTC TCACGAAACA CCTCCTGATC GACTGGCGGC GCGGGGCGCG CTACTTCACC
ACACAGCTGA TCGACCACGA CCACGCCTCG AACCACGGCG CGTGGCAGTG GACCGCCTCC
ACCGGCACCG ATTCGGTGGA TGTGCGCATC TTCGATCCGG TGGCACAGAT GGCGAAGTAC
GACGCTGACG CGACGTTTGT GAAAGAATAC GTCCCCGAAC TGCGAGACGT GCCCGCCGAG
GAGATAGTCG ACTGGCCGAC TCTCTCGCGG GTCGAGCGCG AGACGCTGGC GCCGGAGTAC
CCGCATCCGA TCGTCGACCG GAACGAGGGG TACGAGCGGG CGCAGCGGGT GTTCGAGGAA
GCGCTCGGGA AGCGGTGA
|
|---|
| Protein sequence | MQLFWHRRDP RTRDNVGLAA AARTGTVVPV FVYDTDLFGT MGARQRAFFL RHVKRLKERY
REFGSDLVVR AGDPEKVLVD LADEYDAEAV FYNEYYRPAR RNRQRAVEGA LEGFGVETNA
RTDAVLVDPG RLEERYANHG RFHDEWETVP KPEPSPEPDA DALVNMRDEK TVSEIDPDID
PDIDLPATGY RAARERFDGF LEHGIRSYAD TRDDLARAVE APTHAVSRMS PYLATGAIGI
REMWADATDA FEAATGDERR NVDKYRDELS WREQMYHLLY YTPDLAVANY KSFPNEIAWR
EDDTAFEAWT RGETGYPLVD AGMRQLNAEG YVHNRPRQVV ASFLTKHLLI DWRRGARYFT
TQLIDHDHAS NHGAWQWTAS TGTDSVDVRI FDPVAQMAKY DADATFVKEY VPELRDVPAE
EIVDWPTLSR VERETLAPEY PHPIVDRNEG YERAQRVFEE ALGKR
|
|---|
| |