Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Hlac_0229 |
Symbol | |
ID | 7402158 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Halorubrum lacusprofundi ATCC 49239 |
Kingdom | Archaea |
Replicon accession | NC_012029 |
Strand | - |
Start bp | 247443 |
End bp | 248768 |
Gene Length | 1326 bp |
Protein Length | 441 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 643707292 |
Product | Extracellular ligand-binding receptor |
Protein accession | YP_002564904 |
Protein GI | 222478667 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.00108704 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 0.192891 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGTAACTG CAAGTCCGGA TGAAGAAAAC AAGCGAAACC GAACCAGAGA TATCGAGACG AATTCGGAAA GCCGCTCGCC GGTCGGTCGG CGACGATTCC TGCAGGCCGC CGGCGCCGGT GCGACCGTCG CGTTGGCCGG CTGCTCGGGC GGGAGCGGCG ACGACGACGT GGTTCGGCTG GGGGCGACGT ACATTCTCTC CGGATTCGCC TCGCTGTACG GCGAGGCCGC CGAGCGGGGC CTCGAAATGG CCCAGTCGGA GATCAACGAC AACGGCGGCA TCGACGGACG CGACGTGGAG GTGACCGTCC GAGACACCGA GGCGAGCGCC GATACGGCGA TCCAGCAGAT GCGGAGCCTC GTCGAGGAGG ATAACGTCCA CGGGTTGTTC GGGCTAGACT CCAGCGGCGT CGCACAGGCC GTGGCGCCGC AGGCGGCACA GCTCCAGATG CCGTACATGA TCACGCACGC GGCAACTCCG TTCGTCACCT CGCCCGAAGG CGAACACGAA GACTCCGTCG GCAACGACTA CGTGTTCCGC GACTCCAACA GCCTCTCGCA GGATATCTAC GGGGCGGCAC TGACCGCCGC CGAACTCGAC GCCACGGAGT GGGCGACGAT CGGCCCCGAC TACGCGTTCG GCTACGAGAC GTGGGACTAC TTCCAAGACT TCTGTGCGGG TCTCGGTGTC GACGCCGAGT TCACCGCCGA ACAGTTCCCG CCGCTGGAGA CGGGCGATTA CACGCCGTAC ATCAGTTCGA TCCTCGACGC CGAGCCGGAC GCCGTGCTCA CGCCGCTATG GGGTGCCGAC CTCACCACGT TCATCGGACA GGCAGAGGAT GCGGGCTGGT TCGATCAGAT CGACCACACG CTGTTCAGCG TCGGGATGGG AACCGATCTC GCGAGCGACG GGAACCCGCT CCCGGAAGGC GAGTACGCCT CGACTCGGTA CGACCCGTTC GTCCCCGACA CCGAGGCAAA TAACACGTTC CGCGACACGT ACTACGAGGA ATACGACGCG CTCCCGACGT ACAACGCTGA GGGCGCGTAC CGCGCCGTCT ACCTGTACAA GGAAGCGATC GAATCGGCCG GAAGCACCGA AGCCAGCGCG CTCGTCGAGG AGTTCACCGG GATGGAACAC GCCGGTCCGG TCGGTGACTA CCAGTTCAGC GAGACGAATC AGGCGACGGT GTCGTCCATC TGGGGAACGG TCTCGTACGA CGAGGAATGG GAGAGCAACG TGCTCGATCC CGTGAACAGG TACGAGGCCG GCCCCGACGA GCTGTCCGAG GCGCTCGCCG ACTCCGATCT GCCGACGGGC ATCTAA
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Protein sequence | MVTASPDEEN KRNRTRDIET NSESRSPVGR RRFLQAAGAG ATVALAGCSG GSGDDDVVRL GATYILSGFA SLYGEAAERG LEMAQSEIND NGGIDGRDVE VTVRDTEASA DTAIQQMRSL VEEDNVHGLF GLDSSGVAQA VAPQAAQLQM PYMITHAATP FVTSPEGEHE DSVGNDYVFR DSNSLSQDIY GAALTAAELD ATEWATIGPD YAFGYETWDY FQDFCAGLGV DAEFTAEQFP PLETGDYTPY ISSILDAEPD AVLTPLWGAD LTTFIGQAED AGWFDQIDHT LFSVGMGTDL ASDGNPLPEG EYASTRYDPF VPDTEANNTF RDTYYEEYDA LPTYNAEGAY RAVYLYKEAI ESAGSTEASA LVEEFTGMEH AGPVGDYQFS ETNQATVSSI WGTVSYDEEW ESNVLDPVNR YEAGPDELSE ALADSDLPTG I
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