| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hlac_0217 |
|---|
| Symbol | |
|---|
| ID | 7402146 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halorubrum lacusprofundi ATCC 49239 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_012029 |
|---|
| Strand | + |
|---|
| Start bp | 233676 |
|---|
| End bp | 235979 |
|---|
| Gene Length | 2304 bp |
|---|
| Protein Length | 767 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 643707280 |
|---|
| Product | type II secretion system protein E |
|---|
| Protein accession | YP_002564892 |
|---|
| Protein GI | 222478655 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0630] Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.254644 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.0201912 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAGCGACG GGCCGACCCT CCGGATCGTC GACGAGGACG ACGACGATCC GGGCGGCGCG
GTCCCGGCGC CGGTGCCGCC GGACGACCCC GAGGCGTGGT ACGCGCCGGA CGTGCGCGCG
CAGTACGAAT CGGAGCCGGG GGTCGTCGCC ACGGTCCGCG AGCGCGACGG CGGCCGGTTC
GGGTACGACG TGCGCGAGCC GCCGCTGTCG GGGGCCGACG ATCGCGCGCT CGACCGCGTC
CGCGACCACT TCTCCGGGGT GCGACACCGG CGACCGCTCA CGCGGGTCGG CGTGATCGAG
CGGGCCGAGT CGGGATTCGA GCCGAAGTAC GAGCGGGCGC TCGACCGGCT GCTCGACGCG
AGTCGGGCGG CGCGCCGCCG GATCGACTAC CACGCCTTGC GCGACCTCCG GCTCCTCGGC
GACGTGACGC CCCTCGCCTT AGACGGCCGG ATCGAGGTGG CCGACGTGGG CGACGAGCGC
GAACTGGTCG TCCACACCGA GACGTTCGCG CCCTTGGAGA CCGGTATCGA CGCCGACGCG
GAGTACGTCG AGCGCGTCGC CGCCGAGCGG CTCGCCCGGT ACGCGGTCGG CTTCGCCGGG
CTCTCCGTCG AGGTGGTCGT CGCCCGCGAG CGCTTGCTCG GCTCCGACGC GTTCGAGACG
AAGTACGCCG TCCGCGAGCC CGACCTCCTC CCCGGCGACG AGGCGCTGAT CGAGGAGTGC
AAACAGCGCA TCTGGGAGAC CACCGTCAAC GGCGTCGTCG ACGACCGCGA GGCGTTCGTC
GCCGAGCACG CTCGGCGGTT CCTCTCGCGG CGGCTCACCG CGCGCAACAC CCGGGCGTGG
CTCGGCGCGG CCGCCCACCG AGCCCGCTCC GCGCTGGCCG ACCGCGGGCT CGCGGTCCCG
CCGGTCGACT CGCGGTACGC CCACGATCGC CTCGACGATC TGGCGTACTA CGTGCTCCGC
GACTTCGTCG GCGAAGGAAT CTTAACGGTC CCGATCCGCG ACCCGAACTT GGAGGACGTG
GAGGCCAACC GCGTCGGCGA GCGCGTGAAG GTGGTTCCGC GGACCTCGAT CCTGCAGGGA
GCGGGCGCTG GGGACGAGAA TTCCAGAGAC GCCGGACGAC GCGTCCCGAC GAACCTCGCG
TTCGACGACG AATCGACGTT CGTCAACGTC GTCACCGGGC TGGCGGCCCG CGACGGGACC
GAGCTCAACG CGTCGACGCC GTCCGCGAAG GTGAACCTCG ACGTCGACGG GGTCGACGAG
ACGATCCGGT GTGCGGTGGC GTTACCGGTC ATCTCGGAGG GCGGCCCCCA CGTCTCGATC
CGCAAGCAGA GCGCGGACGC CCTGACGCCC GTCGATCTGA TCGACCGGGG GACGCTCTCT
CCCGATCTGG TCACCCTGCT GTGGCTGCTG TACGAGCACC GCGGGGTCGT CCTCTTCGCC
GGGCCGACCG GCGTGGGGAA AACGACCCTG CTCAACGCTC ACACCCCCTT CATCCCGTTC
GACGACCGGC CGGTGTCGAT CGACGAGGGG TCTCGCGAGG TCCGGCTCCC GCACGAGACC
GGGGTGTCGC TCACGACGCG CGACCACGAG GACGCGTACA AGGCCGTGAG CATGTCGGAG
CTGATGGCCG AGGCGAATTA CTTGAACCCC GACGTTGAGG TGATCGCCGA GATCAACACG
CCCGCGAGCT TCGAGACGTT CGCCGAGACG CTGAATACGG GGCATGGCGT GATCGGCACT
ACTCACGCCG AGGACGTGGA GGCACTCGTC AACCGCGTGA TCGAGCGCGG GCTCCCCGCC
TACCTCCTCC GCGAGGTCGA CCTCGTCGTC TTCCCGCGGC AGGTCGACGG CGAGCGCTAC
GTCTCGCGGG CGGTCGAACT GCTCTCCGAG GCGGAGTACG AGGCGCTCGA CCCAGAGGCG
ACACGCAGCC CGACGGGCAA CCCCAAACAC GGCGGCGCCG GCGTCGTCGA CAAGGGGACG
GAGGCGGTGT ACTACAACAC GGTCGCGTGG CGCGACGCCG ACGGCGAGTT CCGGTTCCCG
GGTGCTCCCG AGAGCGACGC GCCGACCGCG TCCCGTGAGG GGCGCCGCCT TCACGCGCTC
GCTCGCATCG CCGACCATAC CGACCGCGAT GTCGACGCCG TCGAATCGGA GTTCGCGTCG
AAGCGCCGAT ACGTCGAGTA CCTCGTCCGT GAGGGAGTCG ACGACTTCGA CGCGCTGTTC
GAGTTCCTCG CGGACCTCCG GACCGACGAG GCGGCGACCG TCGAGCGCGC CGCCCGCACG
ATGGGCGGGG AGGGACGATC ATGA
|
|---|
| Protein sequence | MSDGPTLRIV DEDDDDPGGA VPAPVPPDDP EAWYAPDVRA QYESEPGVVA TVRERDGGRF
GYDVREPPLS GADDRALDRV RDHFSGVRHR RPLTRVGVIE RAESGFEPKY ERALDRLLDA
SRAARRRIDY HALRDLRLLG DVTPLALDGR IEVADVGDER ELVVHTETFA PLETGIDADA
EYVERVAAER LARYAVGFAG LSVEVVVARE RLLGSDAFET KYAVREPDLL PGDEALIEEC
KQRIWETTVN GVVDDREAFV AEHARRFLSR RLTARNTRAW LGAAAHRARS ALADRGLAVP
PVDSRYAHDR LDDLAYYVLR DFVGEGILTV PIRDPNLEDV EANRVGERVK VVPRTSILQG
AGAGDENSRD AGRRVPTNLA FDDESTFVNV VTGLAARDGT ELNASTPSAK VNLDVDGVDE
TIRCAVALPV ISEGGPHVSI RKQSADALTP VDLIDRGTLS PDLVTLLWLL YEHRGVVLFA
GPTGVGKTTL LNAHTPFIPF DDRPVSIDEG SREVRLPHET GVSLTTRDHE DAYKAVSMSE
LMAEANYLNP DVEVIAEINT PASFETFAET LNTGHGVIGT THAEDVEALV NRVIERGLPA
YLLREVDLVV FPRQVDGERY VSRAVELLSE AEYEALDPEA TRSPTGNPKH GGAGVVDKGT
EAVYYNTVAW RDADGEFRFP GAPESDAPTA SREGRRLHAL ARIADHTDRD VDAVESEFAS
KRRYVEYLVR EGVDDFDALF EFLADLRTDE AATVERAART MGGEGRS
|
|---|
| |