| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hlac_0195 |
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| Symbol | |
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| ID | 7402124 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Halorubrum lacusprofundi ATCC 49239 |
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| Kingdom | Archaea |
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| Replicon accession | NC_012029 |
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| Strand | - |
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| Start bp | 211042 |
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| End bp | 212994 |
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| Gene Length | 1953 bp |
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| Protein Length | 650 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 643707258 |
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| Product | type II secretion system protein E |
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| Protein accession | YP_002564870 |
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| Protein GI | 222478633 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4962] Flp pilus assembly protein, ATPase CpaF |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 0.617369 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCTTCG ATCTCCCTTC GCTGTCGCGG CTCGGTGGCG ACGACACGTC GCTGCGCTCG
CTCCCGTGGC TCGACGGCGA CACAGATAGC TGTCAGTGCG ATCCATCGTT CAGAGAGCCA
GTCGGGACCG GTGTTGACGA CCGAGTGGTC CTTTCAGTGG ACGCCGACGA CTGCCCCGGG
CGCGGCGACC TCGCGGCGAG CCCCGCCTGC CTCGCGACGG TCGTGGAGAC GCTGACGGAG
CGCGACGCCG ACGTGATCCG GACGCACCAC GCGGGCCGAG AGCGAACCTA TGCCGGGCGG
GCCGCGGCGT GCCTGATCGC CGCCGGGCGG TTCCGAGAGC AGATCGAGTT CCACGAGACG
CGGCTCGCGG AGCGCGTGAC CCGAGAGCCT ATCGAGGCAG CGCGGGAGGC GAGCGGCCGC
GAGGGACCAC CGAAGCGGAT CGCCGCGGAG ACCGGACTGG CCGAGACCGT CGCTAGCGCT
GAGGAGACCG GCGACGTGTT GCGAGCGCAC GCCGGTCCGA CGATCGCGGC CACGCGCATC
GCGTCGGCGC CGCCGCCGGA TGCGGCGCTC GTCGACCGAT GGGAGATCGA TACCGGCGCG
ACCGTGCGAC TGTACGAGGG AGCGGGACCG CTTCGGACGT ACCACCTCAC GCCCCCCTCG
GCCCGGCTCG ACGACGAGGC CGTCGAGCGG CTCGCCGACG CCAAAGACCG ACTGCTCGAT
GACCCAACCG GCGGCGACAG GGCACCAGGG CGAGCGGTGC GGTCGATCGC GTCGGCCGGT
GACCCCGTCT CGACACTGGT CGACGTGCTT CGACGACACA CGCGCGGATA CGGCGCGTTC
GAGCACGTGT TCGCTGACGA CCGCGTGAGC GACGCGACGC TGTCGGCGCC CGTCGCCGAG
AATCCGCTTC GGGTGGTCGT CGACGGGGAG CGGTGTCGCA CCAACGTCAG GCTGCCGCCG
GAGGGGGCGG CGACGTTGGC GTCCCGCCTT CGGCGGACGA GCGGGCGAGG GTTCTCCCGA
GCAAGTCCCA CGCTCGACGC GACGATCGAG GCCGAAGCCG GTCGAGTTCG GGTCGCAGCG
ACGACGGCCC CCGCCAGCGA CGGCCTCTCG TTTACGTTCC GCCGCGGTGA CCCGGACGCG
TGGACCCTCG CGCGGCTCGT GGATGGAGGG ACGATCACGC CCGCGGCCGC TGGGCTCCTT
TCCGTGGCCG TCAAGCGAGG CGTGACTGGA CTCGTGGCCG GCGGCCGCGG CGCGGGGAAG
ACGACCGCGC TTGGGTCCCT CCTCTGGGAG CTGCCAGCCG AGACGCGATC GATATTGATC
GAGGATACGC CGGAGCTGCC GGCCGCCGCG GTGACTGCGG CCGGGCGCGA CACCCAGCGG
CTCCGAGTGG GTGACGGCGC AGAGCCGTCA CCGAGCGAGG CGGTGCGAAC TGCCCTCCGG
CTCGGCGGTG GTGCGATCGT CGTCGGCGAG GTCCGCGGCG AGGAGGCAGC GGCGTTGTAC
GAGGCGATGC GCGTCGGCGC GGCCGGCGAG GCGGTCCTCG GGACGATCCA CGGCGAGGAC
CCCGCCGCGG TCCGAGAGCG GGTCGTTACC GATCTCGGCG TCTCCCCATC CTCGTTCGCT
GCGACCGATC TGATCGTTGT GCTCGACGAT CATCGCGTCG AGACGATCGC CGAGGTCGTC
GGTCACGACG GCGAGGCCTC GTTCGAGCCG CTGTTCGAGC GAACCGGATC AGGGTTGGTC
TCTACCGGCC GGATCGATCG CGGGGAGAGC CGGCTCGTCG AGTCGCTCGC AGAGACCGAC
GAATCGTACG CATCCGTCCG CGACGCCGTC GATCGGCGGG GAGAGAGAAT CGGTGAGGCA
GCGAGAACCG GCCGGATCAC GCCGGAGCGC TACGTCGGCC GCGACGGCGA CGGCTGGCAG
AGGACGGACA GCCTCGGCGG TGGCAACCAA TGA
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| Protein sequence | MSFDLPSLSR LGGDDTSLRS LPWLDGDTDS CQCDPSFREP VGTGVDDRVV LSVDADDCPG
RGDLAASPAC LATVVETLTE RDADVIRTHH AGRERTYAGR AAACLIAAGR FREQIEFHET
RLAERVTREP IEAAREASGR EGPPKRIAAE TGLAETVASA EETGDVLRAH AGPTIAATRI
ASAPPPDAAL VDRWEIDTGA TVRLYEGAGP LRTYHLTPPS ARLDDEAVER LADAKDRLLD
DPTGGDRAPG RAVRSIASAG DPVSTLVDVL RRHTRGYGAF EHVFADDRVS DATLSAPVAE
NPLRVVVDGE RCRTNVRLPP EGAATLASRL RRTSGRGFSR ASPTLDATIE AEAGRVRVAA
TTAPASDGLS FTFRRGDPDA WTLARLVDGG TITPAAAGLL SVAVKRGVTG LVAGGRGAGK
TTALGSLLWE LPAETRSILI EDTPELPAAA VTAAGRDTQR LRVGDGAEPS PSEAVRTALR
LGGGAIVVGE VRGEEAAALY EAMRVGAAGE AVLGTIHGED PAAVRERVVT DLGVSPSSFA
ATDLIVVLDD HRVETIAEVV GHDGEASFEP LFERTGSGLV STGRIDRGES RLVESLAETD
ESYASVRDAV DRRGERIGEA ARTGRITPER YVGRDGDGWQ RTDSLGGGNQ
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