Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Hlac_0107 |
Symbol | |
ID | 7401625 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Halorubrum lacusprofundi ATCC 49239 |
Kingdom | Archaea |
Replicon accession | NC_012029 |
Strand | - |
Start bp | 112378 |
End bp | 113943 |
Gene Length | 1566 bp |
Protein Length | 521 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 643707168 |
Product | DNA-directed RNA polymerase subunit beta'' |
Protein accession | YP_002564783 |
Protein GI | 222478546 |
COG category | [K] Transcription |
COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.397905 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 0.532786 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACAGGC AAGACCGACG CGTGGTGTCA CGTGAGTATT TCTCGGACGA ACGGCTCGCC GAACACCACT TCCGATCGTT CAACAACTTC CTGGACCGCG GCATGCAGGA GGTCGTCGAC GAGAAGGAGA CGATCGAGAC CGATATCGGC GACAAAGAGG GCCAAGAGCC CGTCTACGTC GAACTCGGCG ATGTGCGGAT GGTCACTCCG CGCGTCCGCG AGGCCGACGG CTCCGAAGAG CTGCTGTACC CCCAAGAGGC CCGGCTTCGG AACATCACCT ACTCGGCGCC CGTGTTCATG GAGATGTCCA TCGTGCGCGG CGGCGAAGAC GAGCCCGAGC AGGTCGTCGA CACGACCGAG ACGAAGGTCG GCCGGATGCC GATCATGGTC GGCTCGAACA AGTGCAACAT GGCCGGCTTC TCCGACGACG AGCTCATCGA CATCGGTGAA GATCCCGTCG ACCCCGGCGG CTACTTCATC GTCAACGGCT CCGAGCGCGT GCTGATGACC TCGGAGGACC TCGCGCCGAA CAAGATCCTC GCCGAGTACG ACTCGAAGTA CGGCGACGAG ATCCAGGTCG CAAAGACGTT CTCCCAACGC CGCGGGTACC GTGCGCTGGT GCTTTGCGAG CGCAACCGTG AAGGGCTGCT CGAAGTGTCG TTCCCGTCCG TCTCGGGCTC GATTGACTTC GTGACCCTCG TTCGCGCCCT CGGGCTCGAA TCCGACGAGG AGATCGTTCA CCGCGTCTCG GACGACCCCG AGATTGTGAA GTTCATGCTG GAGAACTTGG AGGAGGCCGA GGTGCAGACG ACCGAGGGGG CCATCGAAAC CCTCGGCGAG CGCGTCGCCT CCGGACAGGG GAAGAACTAC CAGCTCAAGC GGGCCAACTA CGTCATCGAC CGCTACCTCC TCCCGCACCT CCACGAGGAG GGCGTCGACG AGGAGGACGT GCGGATCAAC AAGGCGTACT ACCTCTGCCG GATGGCCGAG GCGTGCTTCG AACTCGCCTT GGAGCGCCGC GAGGCCGACG ACAAGGACCA CTACGCGAAC AAGCGCCTGA AGGTCTCCGG CGACCTGATG CGCGACCTGT TCCGGACCGC GCTGAACAAG CTGGCACGCG ACGTGAAGTA CCAGCTTGAG CGCGCGAACA TGCGGAACCG CGATCTCACG GTCAACACGG TTGTCCGCTC CGACGTACTG ACCGAGCGGC TCGAACACCC GATCGCGACG GGGAACTGGG TGGGTGGTCG CTCCGGCGTC TCCCAGCTCG TTGACCGGAC GGACTACATG GGTGTGCTCT CGCACCTCCG GCGCCTGCGC TCGCCGCTGT CGCGGTCGCA GCCGCACTTC AAGGCGCGAG ACCTCCACGC GACCCAGTGG GGTCGCATCT GTCCCTCCGA GACTCCGGAG GGGCCGAACT GTGGACTCGT GAAGAACTTC GCGCAGGCGA TGGAGCTCTC ACAAACCGTA GACGACGAAC AGGGGCTGAA ACGAGAACTG GCGTCGATGG GTGTCGAGGG GATTCCCGGC ATCGAGGGCG TCGACCGACA GACGGCGGAC GACTAA
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Protein sequence | MNRQDRRVVS REYFSDERLA EHHFRSFNNF LDRGMQEVVD EKETIETDIG DKEGQEPVYV ELGDVRMVTP RVREADGSEE LLYPQEARLR NITYSAPVFM EMSIVRGGED EPEQVVDTTE TKVGRMPIMV GSNKCNMAGF SDDELIDIGE DPVDPGGYFI VNGSERVLMT SEDLAPNKIL AEYDSKYGDE IQVAKTFSQR RGYRALVLCE RNREGLLEVS FPSVSGSIDF VTLVRALGLE SDEEIVHRVS DDPEIVKFML ENLEEAEVQT TEGAIETLGE RVASGQGKNY QLKRANYVID RYLLPHLHEE GVDEEDVRIN KAYYLCRMAE ACFELALERR EADDKDHYAN KRLKVSGDLM RDLFRTALNK LARDVKYQLE RANMRNRDLT VNTVVRSDVL TERLEHPIAT GNWVGGRSGV SQLVDRTDYM GVLSHLRRLR SPLSRSQPHF KARDLHATQW GRICPSETPE GPNCGLVKNF AQAMELSQTV DDEQGLKREL ASMGVEGIPG IEGVDRQTAD D
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