Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Hlac_0056 |
Symbol | |
ID | 7401411 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Halorubrum lacusprofundi ATCC 49239 |
Kingdom | Archaea |
Replicon accession | NC_012029 |
Strand | - |
Start bp | 56851 |
End bp | 58905 |
Gene Length | 2055 bp |
Protein Length | 684 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 643707117 |
Product | DEAD/DEAH box helicase domain protein |
Protein accession | YP_002564732 |
Protein GI | 222478495 |
COG category | [R] General function prediction only |
COG ID | [COG1202] Superfamily II helicase, archaea-specific |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.000344856 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | GTGTCACAGC AGTTGGCCGA AGTCGAGACG CTGTTCCTCC ACGAGGCGCG GAGCGACTAC ACCGTTGTCG CCACCCGCGA CGGCAATCGG ATACTCCGCG GGCGGCTCGA ACTCAAGGAG ACCTCCGCAG GCCCGCGACC GGGCAAGTTC CGTGTCATCC GCGACGGCGA GGACCATCCC CGCCAGCCCG GCGAATTCGT TGATCTCGCC CGCGCGGCCG GTCGGATTCG GATCTCCGAG CAGACCTCGC CGAAGAACCG CAAGCGGCTG CAGGCGATGC TCGACGGCTA CCAGCTGGAG GCGATGGCGG TCCGGACCTG TCGGCGTTGC GCGAACGACG GTCGGTATGG CCCCATCACG AGCGACGGCG CAATCGAGCA CAACGACGAG CTGATCTGTC GCGACTGCGC CCGCCGGGAG TTGGAACGCG AGCTGTCGTA CAAAGGCGAG TTCACGGGCG CCGCCGAGGA GCGGCTAGAG GAGCTGCTGT ACGAGTCCGG GGATTTAGAC CGGATCGTCA ACCTCCTGCA AGGCGGACTC GATCCCGATC TCACCAAGTA CGACGAGGTC TCCGCGAACG TCGACGATAT CTCCCCGGTC CGGACCGAGG ACCTCGATCT CCATCCGGAT CTCTCTGCAC ATCTGCAGGG CCGCTTCGAG GAGCTGCTCC CGGTCCAGAG CCTGTCCGTG CGGAACGGTC TCCTCGATGG TACCGACCAG CTCGTCGTGA GCGCGACCGC GACCGGGAAG ACCCTCGTCG GCGAGCTAGC CGGAATCGAC CGGGCACTGA AAGGGGACGG GAAGCTCCTC TTTTTAGTCC CTCTCGTCGC GCTCGCCAAC CAGAAGCACG AGGACTTCAA AGACCGCTAC GGCGACCGGC TGAACGTCTC GATCCGCGTC GGCTCCTCGC GGGTGAACGA CGACGGAAAC CGCTTCGACC CGAACGCCGA CGTGATCGTC GGTACCTACG AGGGGATCGA CCACGCACTC CGGACCGGGA AGGACCTCGG TGACATCGGC ACCGTCGTCA TCGACGAGGT CCACACGCTG AAGGAGGGCG AGCGCGGCCA CCGGCTCGAC GGGCTCATCT CACGGCTGAA GTACTACAGC GAGAATCGGA TGGAGACCCA CGAGGGGTAC GGCGGCACCC AGTTCGTCTA CCTCTCGGCG ACGGTGGGGA ACCCAGAATG GCTCGCCGAG AAGCTCCGAG CCACGCTCAT CGAGTACGAG GAGCGACCCG TCCCCATCGA GCGCCACGTC ACCTTCGCGG ACAGCCGCGA GAAGGCGCAG ATCGCCGACA AGCTCGTGAA GCGCGAGTTC GACACGAAAT CCTCGAAGGG GTACCGGGGC CAGACGATCA TCTTCACGAA CTCCCGGCGA CGATGTCACG AGATCAGCCG GAAGCTCCGG TACGACTCCG CGCCGTATCA CGCCGGACTC GACTACAAGC GCCGGAAGAA AGTCGAACGG CAGTTCGGGA ACCAGGACCT CTCGGCGGTC GTCACCACCG CGGCGCTGGC GGCCGGCGTC GACTTCCCCG CCTCGCAGGT GATCTTCGAC TCGCTGGCGA TGGGGATCGA GTGGCTCTCC GTTCAGGAGT TCTCCCAGAT GCTCGGGCGC GCCGGGCGGC CGGACTACCA CGACCGTGGC CGTGTCTACC TCCTCGTCGA GCCCGACGGC GTTTACCACA ACTCCATGGA CCGGACCGAA GATGAGGTGG CGTTCACCCT CCTCAAGGGG GAGATGGAGG ACGTGGCGAC CCACTACGAC GAGACCGCCG CCGTCGAGGA GACGCTGGCG AACGTCGTCG TCGCGGGCAA GAAGGCCAAG CGGCTCAACG ATCGGATGAT CGGCGAGGTG CCGACGAAAC ACGCGGTCGG AAAGTTACTG GAGTGGAAGT TCATCGACGG CTTCTCGCCG ACGCCGCTCG GTCGCGGTAT CACGAGGCAC TTCCTCGCGC CCGACGAGGC GTTCTTCATG CTCGACGCGA TCCGGAAGGG GACGGACCCG TACCAGATCG TCGCCGACCT CGAACTGCGC GACGACGAGG AGTGA
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Protein sequence | MSQQLAEVET LFLHEARSDY TVVATRDGNR ILRGRLELKE TSAGPRPGKF RVIRDGEDHP RQPGEFVDLA RAAGRIRISE QTSPKNRKRL QAMLDGYQLE AMAVRTCRRC ANDGRYGPIT SDGAIEHNDE LICRDCARRE LERELSYKGE FTGAAEERLE ELLYESGDLD RIVNLLQGGL DPDLTKYDEV SANVDDISPV RTEDLDLHPD LSAHLQGRFE ELLPVQSLSV RNGLLDGTDQ LVVSATATGK TLVGELAGID RALKGDGKLL FLVPLVALAN QKHEDFKDRY GDRLNVSIRV GSSRVNDDGN RFDPNADVIV GTYEGIDHAL RTGKDLGDIG TVVIDEVHTL KEGERGHRLD GLISRLKYYS ENRMETHEGY GGTQFVYLSA TVGNPEWLAE KLRATLIEYE ERPVPIERHV TFADSREKAQ IADKLVKREF DTKSSKGYRG QTIIFTNSRR RCHEISRKLR YDSAPYHAGL DYKRRKKVER QFGNQDLSAV VTTAALAAGV DFPASQVIFD SLAMGIEWLS VQEFSQMLGR AGRPDYHDRG RVYLLVEPDG VYHNSMDRTE DEVAFTLLKG EMEDVATHYD ETAAVEETLA NVVVAGKKAK RLNDRMIGEV PTKHAVGKLL EWKFIDGFSP TPLGRGITRH FLAPDEAFFM LDAIRKGTDP YQIVADLELR DDEE
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