| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hlac_0040 |
|---|
| Symbol | |
|---|
| ID | 7401393 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halorubrum lacusprofundi ATCC 49239 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_012029 |
|---|
| Strand | - |
|---|
| Start bp | 42396 |
|---|
| End bp | 43853 |
|---|
| Gene Length | 1458 bp |
|---|
| Protein Length | 485 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 643707099 |
|---|
| Product | protein of unknown function DUF402 |
|---|
| Protein accession | YP_002564716 |
|---|
| Protein GI | 222478479 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1530] Ribonucleases G and E |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.708501 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.0289003 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGGCCC GCGTTCGCGG CATCTACGCG ACGGCGCTCA CCGAGGCCCT GCTCGACGCG
GGCCACGAGG TCGTCGGCGC GTCGACCCCG ATCCGACGGC GCTTCGACGC CGAGTTCGAA
AGCGCACCGC CCGACGCACG GATCGCGACG ACAGAGGATC GGCAGGGTGT CGGCGCGCAC
GGGGATCCGG ACGCGATAGG GACCCTCCGG GGCCTCCTGA CCGACACGGG ACTCGACGCG
CTGGCGTGGA CCGATCCGAC CCCGCCCGGG ACCGTCTGCG ACGGGACGGT GACCGAGACG
CTCGGCGGTG GGGCGGTCGT ACGGCTTCGC GTTGGCGGGG GCGAGAGCGA GGGCGACGCC
ACCACCGAGG GGTACCTCCC GTACGGGAGC GTCGACGACC GAATCGAGAC CGGCGATCCG
GTCCGGGTGC AGGTCCGGGA GTCCGCGGCG CCATGGACGG ATCGCCGCCC CGAGTTGGAC
GGGTCGCTGC GAGCGGGCGG CGGGCTCGTC ACGCTCGAAC CCGGCTCGGG CACCCGCGTC
GACGCGCGGA ACGACAAGGA CGCGCGAGAG CTGTCGGGAA TGCTCGACCT GCTCGGACTG
AAGCCGCCGG AGGGGTGGCG CGCCGTCTGG AAGCCGCCCG CGGTCGACGC CGACACCGAG
GAGCTGCAGG CCGGACTCGA CCGGGCGGTC GCGGCCGTCG AGGGGCTGGA CGACGCCGTC
GACGCGGCGG GAGGCGCCGG CGTTCTCGAC GGTTCGGACA GCGTTCGCGA GGAGCCGTTG
ACGCGCCCGA ACGCCGGCGT CTGGGTGTGG TTCGGCCGCG AGAGCCGGTT CGCGCTCGAC
GACCGCCGAC GCGAGGCGAC CGCGACGATG CCGGGTCACC ACCGGGTGAA GGCGGGGTCG
GCGGACGCAT CTTCGGGCGT TGACCTCGCA GAGGCGCTGT GCGAGCCCGA CGCGGACGCC
TCATTCCCGT TCGGGGTCGT GACGGACGCG TTCGGGCCGG CCGAGGGCGA CGCGCTCCGG
CTCGAACACG GCAAGCCCGA CGGGCGACTG ATCACGCTGG GCGAGGCGAC GGTGACCACA
GTCGACGCCG ACGGCTCGGT CGCGGTCGAG CGCGAGATGA CCGGCGGCGG CTCTTACGAC
GGGTTGGACG TGCCCCGCGA GGCCGGCGAC ATCGCTGAGA CCAGCCTGAA GGAGGGCCGA
TGGTGGTACC CGACGACGTA CCGCGGGCGC GATGGGACGG TGCGCGGGAC GTATGTCAAC
GTCTGCACGC CGGTCGAGGT GTTCCCGGAC GCCGCCCGCT ACGTCGACCT TCACGTCGAC
GTGATGAAAC ACCCCGACGG GACCGTCGAG CGCGTCGACG ACGACGAACT GCGGGACGCA
GAGGCGGCCG GAGACGTGCC GGAGCCGCTG GCGGAGAAGG CTCGGAGCGT GGCGTCGGCG
CTGGAGAACG CGCTGTGA
|
|---|
| Protein sequence | MKARVRGIYA TALTEALLDA GHEVVGASTP IRRRFDAEFE SAPPDARIAT TEDRQGVGAH
GDPDAIGTLR GLLTDTGLDA LAWTDPTPPG TVCDGTVTET LGGGAVVRLR VGGGESEGDA
TTEGYLPYGS VDDRIETGDP VRVQVRESAA PWTDRRPELD GSLRAGGGLV TLEPGSGTRV
DARNDKDARE LSGMLDLLGL KPPEGWRAVW KPPAVDADTE ELQAGLDRAV AAVEGLDDAV
DAAGGAGVLD GSDSVREEPL TRPNAGVWVW FGRESRFALD DRRREATATM PGHHRVKAGS
ADASSGVDLA EALCEPDADA SFPFGVVTDA FGPAEGDALR LEHGKPDGRL ITLGEATVTT
VDADGSVAVE REMTGGGSYD GLDVPREAGD IAETSLKEGR WWYPTTYRGR DGTVRGTYVN
VCTPVEVFPD AARYVDLHVD VMKHPDGTVE RVDDDELRDA EAAGDVPEPL AEKARSVASA
LENAL
|
|---|
| |