| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hlac_0001 |
|---|
| Symbol | |
|---|
| ID | 7401478 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halorubrum lacusprofundi ATCC 49239 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_012029 |
|---|
| Strand | + |
|---|
| Start bp | 780 |
|---|
| End bp | 2453 |
|---|
| Gene Length | 1674 bp |
|---|
| Protein Length | 557 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 643707055 |
|---|
| Product | orc1/cdc6 family replication initiation protein |
|---|
| Protein accession | YP_002564677 |
|---|
| Protein GI | 222478440 |
|---|
| COG category | [L] Replication, recombination and repair
[O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG1474] Cdc6-related protein, AAA superfamily ATPase |
|---|
| TIGRFAM ID | [TIGR02928] orc1/cdc6 family replication initiation protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.810382 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACGAAG GAGAGAACAC ACCGCAGGCC GATGAATCGA AAGACAACAG CGGGATAACC
GGCGATCGGT CCGGGACTGA CCAGGTTGAC GAAACCGACG GATCCGACGA AACCGACGCT
AACCTCGACG ATCCGCCATC ACCCGGCTCG ACGAACTCTG ATTTAAACAC GGATCTACAG
TCGGATCCCG AAACTGACGT TTCCACGGAC ATCGATGTCG GAAGCGGCGG ACGAGACCGC
TCCTCTCCGG ATGTCGACTT CGACGGTGTC GTCCTCGACG ACGACGACGA CAACCAGGGT
CTGTTCGACG ATCTGCTCTC CGGAGAGCCG ATATTCGAGA ATAAAGAGGT CCTCCGTCCC
TCCTACACTC CCCACGAGCT TCCCCACCGA AACGACCAGA TCAATCGGAT GGCGACGATC
CTCGTCTCCG CGCTGCGCGG GGAAACGCCC TCTAATATCC TCATTTACGG CAAGACGGGA
ACGGGGAAGA CGGCCTCCGC GAAGTTCGTC TCCCAAGAGC TTGAGTCCAC CTCACAGAAA
TACGACGTAC CCTGCGAGGT CGAGTACATT AACTGCGAGG TGACGGACAC GCAGTACCGC
GTCCTCGCGC AGCTCGCGAA CACCTTTATC GAGAAGAACC AGGCGGTCAT CGCGGACCAA
CTGGAGCGGT GTCGCGAACT CCGCTCTGCC GCCGCCGACG CTCCAGCCGC CCTCGCCGAC
ACCGAGTTCG CAACGCTCGA CGACCTCGAC GCGCGAATCG ACGAGCTCGA AACCGATGCC
GAAGAGATGG AGGAGGTCCC CATGACTGGC TGGCCCACCG ACCGGGTCTA CTCGACCTTC
TTCGAGGCAG TCGACTACCA CGAGCGCGTG GTTGTTATCA TGCTCGACGA GATCGACAAG
CTTGTCGAGA AGAGCGGGGA CGACACCCTC TATAACCTCT CTCGGATGAA CTCGGAACTC
AACAGGTCCC GGATCTCGAT CATGGGGATC TCGAACGATC TGAAATTCAC CGATTTCCTC
GACCCCCGTG TCAAGTCGAG CCTTGGCGAG GAAGAGATCG TCTTCCCGCC CTACGACGCG
AACCAGCTCC GCGACATCCT CCAGCACCGC GCCGATATTT CGTTCAAGCA GGACGCGCTC
ACGGACGACG TGATCCCCCT CTGTGCGGCG TTCGCCGCTC AGGAACACGG CGACGCCCGT
CGCGCGCTCG ATCTACTCCG TACTGCGGGC GAACTCGCCG AGCGCTCGCA GGCTGAGATC
GTCGCCGAGA AACACGTCCG GCAGGCGCAG GACAAGATCG AACTCGACCG CGTCGTCGAG
GTTGTCCGCA CCCTCCCGAC CCAGAGCAAG ATCGTGCTGT TCGCGGTCAT CCTCTTGGAG
AAGAACGGCG TGCACAACAT CAACACTGGC GAGGTATTCA ACATCTACAA ACGCCTCTGC
GAGGAGATCG ACGCCGACGT GCTCACCCAG CGCCGCGTCA CCGACCTCAT CAGCGAACTC
GACATGCTCG GGATCGTCAA CGCCGTCGTC GTCTCGAAGG GGCGCTACGG CCGGACCAAG
GAGATGGGCC TGTCGGTTCC CGTCGAGGAG ACCGAGGCCG TCTTGCTGTC CGACTCCCGA
CTCGGCGACA TCGAGAACGC GCAGCCGTTC GTCCAGGCCC GATTCGACAA CTGA
|
|---|
| Protein sequence | MDEGENTPQA DESKDNSGIT GDRSGTDQVD ETDGSDETDA NLDDPPSPGS TNSDLNTDLQ
SDPETDVSTD IDVGSGGRDR SSPDVDFDGV VLDDDDDNQG LFDDLLSGEP IFENKEVLRP
SYTPHELPHR NDQINRMATI LVSALRGETP SNILIYGKTG TGKTASAKFV SQELESTSQK
YDVPCEVEYI NCEVTDTQYR VLAQLANTFI EKNQAVIADQ LERCRELRSA AADAPAALAD
TEFATLDDLD ARIDELETDA EEMEEVPMTG WPTDRVYSTF FEAVDYHERV VVIMLDEIDK
LVEKSGDDTL YNLSRMNSEL NRSRISIMGI SNDLKFTDFL DPRVKSSLGE EEIVFPPYDA
NQLRDILQHR ADISFKQDAL TDDVIPLCAA FAAQEHGDAR RALDLLRTAG ELAERSQAEI
VAEKHVRQAQ DKIELDRVVE VVRTLPTQSK IVLFAVILLE KNGVHNINTG EVFNIYKRLC
EEIDADVLTQ RRVTDLISEL DMLGIVNAVV VSKGRYGRTK EMGLSVPVEE TEAVLLSDSR
LGDIENAQPF VQARFDN
|
|---|
| |