| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dtpsy_3540 |
|---|
| Symbol | |
|---|
| ID | 7384666 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax ebreus TPSY |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011992 |
|---|
| Strand | - |
|---|
| Start bp | 3790382 |
|---|
| End bp | 3791581 |
|---|
| Gene Length | 1200 bp |
|---|
| Protein Length | 399 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 643656857 |
|---|
| Product | integrase family protein |
|---|
| Protein accession | YP_002554963 |
|---|
| Protein GI | 222112699 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG4974] Site-specific recombinase XerD |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCGAAAA TCAAGCTCAC TAAGTCCGCA GTCGATGCGG CACAACCGCA GGCGCAAGCC
GTCGAACTCC GGGACACGCT GGTGCCCGGC TTCTTGTGCA AGATTACACC AGCGGGCCGC
AAGGTGTTCA TGCTCCAGTA CCGCACGAAC GCCGGCGAGC GGCGCAAGCC CGCATTGGGC
CTGTACGGGG AACTGACCGT CGAGCAGGCC CGTTCGCTGG CCCAGGAATG GCTGGCCGAG
GTGCGCCGGG GCGGCGACCC CAGCGCTGCC AAGGCCGCCG CCCGTTCAGC CCCCACGGTC
AAGGAGCTGT GCACCAAGTT CATGGAGGAC TACTCCAAGC AGCGCAACAA GCCCAGCACC
CAGCGCGGGT ATCAGGCCGT CATCGACCGC TGCATCGTTC CGATGCTGGG CCGTTTGAAG
GTTCAGGACG TGAAGCGGCC GGACGTGGCC ACGGCGATGA AGAAGATGGC CCACAAGCCC
GCCGAGGCCA ACCGTGCTTT CAGCGTGATG CGCAAGATGT TCAACCTGGC CGAGGTGTGG
GGCCACCGGC CTGACGGCAC CAACCCTTGC CGCCACGTCC CGATGTATCC CAACGGCAGG
GCTACCCACC TCATCAGCGA CGAGGACATG GGCAAGCTGT TTCGGCGACT GGAGCACATC
GAAGCCGAGG GTCTGGAGAA CTACGTCATC CCGCTGGCGA TCCGTCTGCA ATTCGAGTTC
GCCGGCCGCC GCTCCGAAAT CGTGACGCTC CGATGGGATT GGGTGGACCT GGACAACCGC
CGCGTGGTCT GGCCGGACAG CAAGACGGGC GGCATGTCCA AGCCCATGAG CGAGGAAGCC
TATCGACTGC TCTCGACGGC GCCACGGCAG GAAGGCACTC CCTATGTGCT GCCGTCTCCA
AGCCATCCCG GCAAGCACCT GACCACGGGC GAGTATTACG GCGGCTGGAG CCGCGCCCTC
AAGGCGGCGG GCGCCACGCA CGTCGGCACG CATGGCATCC GCCACCGCTC CGCGACCGAC
ATTGCCAACT CGGGCATCCC GGTCAAGGTC GGCATGGCGC TGACGGCGCA CAAGACCGTG
GCGATGTTCA TGCGCTACGT CCACACCGAG GACGATCCGG TGCGCAAGGC GGCCGAGCTG
GTGGCGAACC GGCGCAAGAC GATCACCGAG GCGCAACGTC CCGCAGAGGT GGCAGCATGA
|
|---|
| Protein sequence | MAKIKLTKSA VDAAQPQAQA VELRDTLVPG FLCKITPAGR KVFMLQYRTN AGERRKPALG
LYGELTVEQA RSLAQEWLAE VRRGGDPSAA KAAARSAPTV KELCTKFMED YSKQRNKPST
QRGYQAVIDR CIVPMLGRLK VQDVKRPDVA TAMKKMAHKP AEANRAFSVM RKMFNLAEVW
GHRPDGTNPC RHVPMYPNGR ATHLISDEDM GKLFRRLEHI EAEGLENYVI PLAIRLQFEF
AGRRSEIVTL RWDWVDLDNR RVVWPDSKTG GMSKPMSEEA YRLLSTAPRQ EGTPYVLPSP
SHPGKHLTTG EYYGGWSRAL KAAGATHVGT HGIRHRSATD IANSGIPVKV GMALTAHKTV
AMFMRYVHTE DDPVRKAAEL VANRRKTITE AQRPAEVAA
|
|---|
| |