| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dtpsy_3520 |
|---|
| Symbol | |
|---|
| ID | 7384646 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax ebreus TPSY |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011992 |
|---|
| Strand | - |
|---|
| Start bp | 3773366 |
|---|
| End bp | 3775333 |
|---|
| Gene Length | 1968 bp |
|---|
| Protein Length | 655 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 643656839 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_002554945 |
|---|
| Protein GI | 222112681 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3843] Type IV secretory pathway, VirD2 components (relaxase) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCAAAC GCCGCGATGA CGATTTCCGC ATCCGCCCCA GCGCCCCCAA GAACCGGGGC
CAGGGCTTCA TCGCCAAGGT GCTCCAGCAG ACCGGCAAGG CCAGCAGCGG CAAGTCCTCG
GTGCGCCGTA CTGGCGCTGC CAGTGGCACC GGCCAACGGC CCGGCTCGCG CCTGGGGCGC
GGCCACACGG CGGCGCGCTT CGCGGGGGCG AAGCTCACGC CCATGTCGCG GCGCGTGACC
ATCAAGACCT TGCTGGTCAA CCAGCAGCGG GCCAGTCCGC AGTCGCTCGC CAAGCACCTG
CGCTACGTTG AGCGCGATGG TGTGGGCCGT GATGGCGAGC CGGGCCAAGC CTACGGGCCG
CAGACCGATG CCGCCGACCT CGACGCTTTC AAGGAACGCT GCGCCGACGA CCGACACCAT
TTCCGCTTCA TCCTCTCACC CGAGGATGGC GCGGAACTCG AAGACCTGCG CACCTACACG
CGGCACCTCA TGGGCCGCAT GGAGGCCGAC CTGGGCACAC GGCTGGAGTG GGTGGCCGTC
GATCACTGGA ACACCGACAA CCCGCATACC CACCTGATCG TGCGCGGGCG CGACGACACC
GGCAAAGACC TCATCATCGC GGGCGACTAC ATCGCTGATG GCTTCCGCCA TCGTGCCGCC
GAACTGGCGA CCGAATGGCT GGGGCCGCGC ACCGAGCTGG AGATCCAGCA GACCTTGCAG
CGCGAAGTGG ATCAGGAGCG ATGGACGAGC CTGGATCGCA CGCTCAAACG CGAGCTGGGC
GACGATGGCT TGTTGCATGT CGAACGGTTC AACGAACCGC GGCTGCAACG CCAGCGCCTG
CTGCTGATCG GCCGCCTGCA ACGCTTGCAG CGCCTGGGCC TGGCCGATGA AACGCAGCCC
GGCACCTGGG CCGTCCATGC CGACGCGGAA AAGACCCTGC GCGCCCTGGG CGAGCGTGGC
GACATCATCC GCACCATGCA GCGGGCCATG CGCGGCGAGC CGCGCGAGCT GGCGGTGTTC
GAGCCGGGCG ATGATGGCCG CACGGTCATC GGGCGTGTCG CCGCGAAAGG GTTGGCCGAC
GAACTGCACG ACCGGGGCTA TCTGGTCATC GACGGCGTGG ACGGCAAGGC CCACTATGTC
GCGCTGAATG CCCGTGACGA GCTGGCGAAC TATCCGGCCG GCGCCGTGGT GGAGGTGAAG
GGATCGGCCG ACGCGCGCGC GGCCGACCGC AACATTGCCG CGCTGGCGAG CGGTGGCCTG
TACCGCACCG ACCATCACCT TGCCATCGCC CAGGGCCAGG CCCTGCCGGG CCGTGATCCG
CAAGAGGTGG TCGCAACCCA CGTCCGCCGG CTGGAAGCCT TGCGCCGGGC AGGCATCGTG
GAACGTGTGG CCGAGGGTCT ATGGAAGGTG CCGGACGACC TGCCCGAGCG TGGTCGCCAG
TACGACGCGC AGCGCCTGGG CAGCGTGGCC GTGGAGCTGA AATCGCATCT GCCCATCGAG
CGGCAGGCCC GCGTGATCGG GGCCACCTGG CTTGACCAGC AATTGATCGG CGGTGGCAAA
GGGCTGGGCG ATTTGGGCTT TGGCAGCGAC GCCAAGCAGG CCATGCAGCA ACGCGCCGAC
TTCCTGGCCG AACAGGGATT GGCCGAGCGG CGCGGGCAGC GTGTGATCCT CGCCCGGAAC
CTGCTGGGAA CGCTGCGCAA CCGGGAGCTG GCGCAGGCCG CGAAGGACAT TGCTGCCGAC
ACCGGCCTGG AGCATCGCCC GGTGGCCGAC GGCCAGCGCG TGGCGGGCAT CTACCGCCGC
AGCGTCATGC TCGCCAGTGG CCGCTACGCG ATGCTGGATG ACGGCATGGG GTTCAGCCTG
GTGCCTTGGA AGCCGGTGAT CGAGCAGCGG CTGGGGCAGC AGGTTGCGGC AACGATACGG
GGCAATGACG CAACCTGGAT GCTCACGCGA AGTCGCGGTA TTCATTAG
|
|---|
| Protein sequence | MTKRRDDDFR IRPSAPKNRG QGFIAKVLQQ TGKASSGKSS VRRTGAASGT GQRPGSRLGR
GHTAARFAGA KLTPMSRRVT IKTLLVNQQR ASPQSLAKHL RYVERDGVGR DGEPGQAYGP
QTDAADLDAF KERCADDRHH FRFILSPEDG AELEDLRTYT RHLMGRMEAD LGTRLEWVAV
DHWNTDNPHT HLIVRGRDDT GKDLIIAGDY IADGFRHRAA ELATEWLGPR TELEIQQTLQ
REVDQERWTS LDRTLKRELG DDGLLHVERF NEPRLQRQRL LLIGRLQRLQ RLGLADETQP
GTWAVHADAE KTLRALGERG DIIRTMQRAM RGEPRELAVF EPGDDGRTVI GRVAAKGLAD
ELHDRGYLVI DGVDGKAHYV ALNARDELAN YPAGAVVEVK GSADARAADR NIAALASGGL
YRTDHHLAIA QGQALPGRDP QEVVATHVRR LEALRRAGIV ERVAEGLWKV PDDLPERGRQ
YDAQRLGSVA VELKSHLPIE RQARVIGATW LDQQLIGGGK GLGDLGFGSD AKQAMQQRAD
FLAEQGLAER RGQRVILARN LLGTLRNREL AQAAKDIAAD TGLEHRPVAD GQRVAGIYRR
SVMLASGRYA MLDDGMGFSL VPWKPVIEQR LGQQVAATIR GNDATWMLTR SRGIH
|
|---|
| |