| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dtpsy_3516 |
|---|
| Symbol | |
|---|
| ID | 7384642 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax ebreus TPSY |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011992 |
|---|
| Strand | - |
|---|
| Start bp | 3766681 |
|---|
| End bp | 3768189 |
|---|
| Gene Length | 1509 bp |
|---|
| Protein Length | 502 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 643656835 |
|---|
| Product | RND efflux system, outer membrane lipoprotein, NodT family |
|---|
| Protein accession | YP_002554941 |
|---|
| Protein GI | 222112677 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1538] Outer membrane protein |
|---|
| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACACCC TTGCTCGCTA CACCATGCTC GCCACGCTCA CGGCGGCAAT GGGCGGCTGC
GCCGTCGGGC CAGACTTCCA GCGCCCGGCC GCGCCCACCG TGCATTCTTA TGCTGCTGCA
GAGCTGCCCG CGCAAACCGC ATCGGCGCCG GGCCTGGGCG GCGAAGCGCA ACGCTTCGCG
CCAGGACAGG AAGTCGCGGC GCAGTGGTGG AAGGCGTTCG GCTCACCGGC GCTTGACGAA
CTGGTCGCGT CTGCCCTGCA GGCCAACCCG GACTTGAAGG CCGCCGAGGC CGCGTTGCGC
GCGGCGCGCG AGGCGGCCAC GGCCCAGCGC GGGGCTTTCT GGCCCAGTGT CGATGCCAAC
GTGAATTCGA CCCGGCAGAA GATTGCCGCA ACCTTGGCCA GTCCGGCCGA ATCCGGCGAC
ACGTTCTATA CCTTGCATAC GGCCCAGCTC AGCATCAGCT ACGTGCCGGA CGTGTTCGGG
GGCACGCGAC GCCAGGTCGA GGCGCTGTCC GCCGGGGTGG ACGTGCAGCG CTTTCAGCGC
GAGGCCGTCT ACATGACACT GGTCTCCAAC GTGGTCAACA CGGCCATCGA GGAAGCGTCG
CTGCGCGCGC AGATTGATGC GACGCGCGGC CTCATCGACT TGGCGTCGCA ACTACTGGAC
ATCACGCGCC GCCAGCGCCT GGCCGGCCAC CTCGGCGCTG CGGATGTGGC CGCGCAGGAG
GCGGCGCTGG CACAGGCCCA AGCCTCGCTG CCACCGTTGG AGAAGCAACT GGCCGCACAG
CGGAACAAGC TCGCGATGCT GGCCGGGCGC CTGCCCAGCG AGCAGCTTGC GCAGCATTTC
GAATTGGCTT CGCTCACCCT GCCCGTGGAA CTGCCACTCA GCCTGCCATC GCGCCTGGTC
GAGCAGCGGC CGGACGTGCG CGCGGCGCAA GCACAGTTGC ACGCGGCCAG CGCACAGATC
GGCGTCGCAA CTGCGGCCCG GCTGCCCAGC CTCACGCTGA CGGCCGCCTT GGGCAGCTCC
GCGCTTTCCC TGCCGCAACT CCTTCGCAGC GGTGGCGGCT TCTGGTCGGT CGGTGGAGAC
TTGTTGCAGC CGATCTTTCG CGGTGGAACG CTGCTGCACC AGCAGCGCGC AGCCGAGGCG
GCCTACGAGC AGGCCGCAGA GCAGTACCGC AGCACCGTGC TGACCGCCTT CCAGAACACG
GCCGACACCT TGCAGGCCAT CGTCAGCGAC TCGGAGACCT TGCGCGCCAC CAGCCACGCC
GAAGCCGCAG CACGGCGCAG CCTGAGCATC GTGCGCCGCC AGCGGGAACT GGGCGGCGCA
GCCCAGGCGG ATGTGCTCCT CGCCCAGCAA ACCTACCAGG GAGCCACGCT GGCGCTGGTT
CAGGCGCAAG CCGCCCGCTA CACGAACACC GTCGCGCTGT ACCAGGCGCT GGGCGGATGG
TGGCAGACGG GCAATGACGC GCCGCCTCTT GCACAACAAA GCACAACCCA AACGGGAGCG
CCCCTATGA
|
|---|
| Protein sequence | MNTLARYTML ATLTAAMGGC AVGPDFQRPA APTVHSYAAA ELPAQTASAP GLGGEAQRFA
PGQEVAAQWW KAFGSPALDE LVASALQANP DLKAAEAALR AAREAATAQR GAFWPSVDAN
VNSTRQKIAA TLASPAESGD TFYTLHTAQL SISYVPDVFG GTRRQVEALS AGVDVQRFQR
EAVYMTLVSN VVNTAIEEAS LRAQIDATRG LIDLASQLLD ITRRQRLAGH LGAADVAAQE
AALAQAQASL PPLEKQLAAQ RNKLAMLAGR LPSEQLAQHF ELASLTLPVE LPLSLPSRLV
EQRPDVRAAQ AQLHAASAQI GVATAARLPS LTLTAALGSS ALSLPQLLRS GGGFWSVGGD
LLQPIFRGGT LLHQQRAAEA AYEQAAEQYR STVLTAFQNT ADTLQAIVSD SETLRATSHA
EAAARRSLSI VRRQRELGGA AQADVLLAQQ TYQGATLALV QAQAARYTNT VALYQALGGW
WQTGNDAPPL AQQSTTQTGA PL
|
|---|
| |