| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dtpsy_3446 |
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| Symbol | |
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| ID | 7381980 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidovorax ebreus TPSY |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011992 |
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| Strand | - |
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| Start bp | 3690613 |
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| End bp | 3692145 |
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| Gene Length | 1533 bp |
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| Protein Length | 510 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 643656766 |
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| Product | spermidine synthase |
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| Protein accession | YP_002554872 |
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| Protein GI | 222112608 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4262] Predicted spermidine synthase with an N-terminal membrane domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.351486 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGGACA CCAGCACCTC CGCCCCGCGC CCCATCGACG TCGCCCTGCT GGCCAGCGTG
TTCGTGATCG CCGCTTGCGG GCTGCTGTAC GAGCTGGCGG CCGGGGCGCT GGCGTCGTAT
GTGCTGGGCG ACTCGGTGCT GCAGTTCTCC ACCGTCATCG GCACCTATCT GTTCGCCATG
GGCGTGGGCT CGTGGCTGTC GCGTTACTTC GAGCGGCAGC TGCCCGCGCA TTTCCTGCGC
ATCGAGCTGC TGGTGGCGCT CATCGGGGGT GCTCTGCCGG CTGTGCTGTT CCTGGCCAAT
GCCTATGTGC CCAGCGCGTT CCGCGTGCTG CTGTACGGCA TGGTGCTGCT GGTGGGCACG
CTGGTGGGCT TGGAGATCCC GCTGGTCATG CGCATCTTGA AGCGCAACGT GCAGCTCAAG
GACCTGGTCT CGCAGGTGCT CACCTTCGAC TACCTGGGCG CGCTGGCCGT GTCGATGGCG
TTTCCGCTGC TGCTGGTGCC GCAGTTGGGG CTGGTGCGCA CGGGGCTGCT GTTCGGCTTC
ATGAACGCGG CCGTGGCCGT GTGGGCGCTG TGGCTGTTCC GGCATGAGCT GCGGCGCTTT
GGCGCGCACG CGCTGGCCTG TGCGCTGGTG CTGGCGGCCC TGCTGGCGGG GCTGCTGGGG
GCCGAGCACA TCACCCGCTT CGCCGAGGAC AAGTTCTACC AGGACCGCAT CGTGCTCAGC
AGCGCCTCGC CCTACCAGCG CATCGTGGTC ACGCACGGGC GCGCGGGGCA TCGCCTGTAC
CTGAACGGCA ACCTGCAGTT CGCCGAGCGC GACGAATACC GCTACCACGA GGCCCTGGTG
CACCCCGTGA TGGCCGCGCA CGGTCATCCG AAGCGCGTGG CGGTGCTCGG CGGCGGCGAC
GGCATGGCCG TGCGCGAGGT GCTCAAGTAC CCCTCGGTGG AGTCGGTCAC GCTGGTGGAG
CTGGACCCGG CGATGACGCA GCTCTTCGGC AGCCACCCCA CGCTGCGGCA GCTGAACGGC
GATGCGTTGG CGTCACGCAA GCTCACCATC GTCAACACCG ATGCCTTCCA GTGGCTGCAG
CAGGGGGATG ACACGTATGA CGTGATCGTG GTGGACTTTC CCGACCCCAC CAACTTCGCC
ATCGGCAAGC TCTACACCAA CAGCTTCTAC GCCCTGCTGG ACCAGCGCCT GGCGGCCAGC
GGCTACGCGG TGGTGCAGAC GACCTCGCCG CTGGTGGCGC GCAGGAGCTT CTGGACGGTG
GTCACGACCA TCGAGTCCGT GGGCCTGCAG GCGCGGCCCT ACCACGCGCA TGTGCCGAGC
TTTGGCGAGT GGGGCTTCGT CATCGCCAGC CGCCGCCCCT GGCGCGTGCC GGCCGAGCTG
CCCGCGGGGC TGCGCTTCCT GGACGCGGCC GCGCTGCCCC TGCTGTTCGA CTTCCCGCGG
GACATGGCGC GCGTGCCCGC CGAGGTCAAC CGCCTGTCCA ACCAAGTGCT GGTGCACACC
TACGAACAGG AGTGGGGCCA GGTCGCCCAC TGA
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| Protein sequence | MKDTSTSAPR PIDVALLASV FVIAACGLLY ELAAGALASY VLGDSVLQFS TVIGTYLFAM
GVGSWLSRYF ERQLPAHFLR IELLVALIGG ALPAVLFLAN AYVPSAFRVL LYGMVLLVGT
LVGLEIPLVM RILKRNVQLK DLVSQVLTFD YLGALAVSMA FPLLLVPQLG LVRTGLLFGF
MNAAVAVWAL WLFRHELRRF GAHALACALV LAALLAGLLG AEHITRFAED KFYQDRIVLS
SASPYQRIVV THGRAGHRLY LNGNLQFAER DEYRYHEALV HPVMAAHGHP KRVAVLGGGD
GMAVREVLKY PSVESVTLVE LDPAMTQLFG SHPTLRQLNG DALASRKLTI VNTDAFQWLQ
QGDDTYDVIV VDFPDPTNFA IGKLYTNSFY ALLDQRLAAS GYAVVQTTSP LVARRSFWTV
VTTIESVGLQ ARPYHAHVPS FGEWGFVIAS RRPWRVPAEL PAGLRFLDAA ALPLLFDFPR
DMARVPAEVN RLSNQVLVHT YEQEWGQVAH
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