| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dtpsy_3134 |
|---|
| Symbol | hemE |
|---|
| ID | 7383356 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax ebreus TPSY |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011992 |
|---|
| Strand | + |
|---|
| Start bp | 3348864 |
|---|
| End bp | 3349976 |
|---|
| Gene Length | 1113 bp |
|---|
| Protein Length | 370 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 643656450 |
|---|
| Product | uroporphyrinogen decarboxylase |
|---|
| Protein accession | YP_002554567 |
|---|
| Protein GI | 222112303 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0407] Uroporphyrinogen-III decarboxylase |
|---|
| TIGRFAM ID | [TIGR01464] uroporphyrinogen decarboxylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCTTCG CCCCCCTCCA GAACGACACC TTCCTGCGGG CCTGCCGTCG TCAGGCCACC
GACTACACGC CCCTGTGGCT GATGCGCCAG GCGGGCCGCT ACCTGCCCGA ATACAAGGCC
ACGCGCGCCA AGGCCGGCAG CTTCATGGGT CTGGCCACGA ACGTGGAGTA CGCCACCGAG
GTGACGCTGC AGCCGCTGGA GCGCTTCCCT CTGGACGCGG CCATCCTGTT CAGCGACATC
CTCACCGTGC CCGACGCCAT GGGCCTGGGC CTGTCGTTCG CCGAGGGCGA AGGCCCGCGC
TTTGCCAAGG CGGTGCGCGA CGAGGCCGAC GTGGCCGCGC TGGCCGTGCC CGACCTGGAC
AAGCTGCGCT ATGTGTTCGA CGCCGTCACC AGCATCCGCC GCGCGCTGAA CGGCCGTGTG
CCGCTGATCG GCTTCTCGGG CAGCCCCTGG ACGCTGGCCT GCTACATGGT CGAGGGCAAG
GGCAGCGACG ACTACCGCCT CGTCAAGACG CTGATGTACA GCCGCCCGGA CCTGATGCAC
CGCATCCTGG CGGTGAATGC GGACGCCGTG GCCGCGTACC TGAACGCCCA GATCGACGCC
GGCGCCCAGG CGGTCATGGT CTTCGACAGC TGGGGCGGCG TACTGGCCGA TGGGTGCTTC
CAGGACTTCA GCCTGGAATA CACCCGGCGC GTGCTGGCGC AGCTCAAGCG CACGGGCGTG
GACGGCCAGG ACGTGCCGCG CATCGTCTTC ACCAAGGGCG GCGGCATCTG GCTCGACGAC
ATGAAGGACA TCGACTGCGA GGTGCTGGGC CTGGACTGGA CGGCCCACCT GGGCAAGGCG
CGCGCCATCG TCGGCGGCCA GGTCGGCGGC CCCGGCAAGG CACTGCAGGG CAACATCGAC
CCCAACGTGC TGTTCGCCCC CTCGGCGCAG ATCGTCACGC AGGTGCGCGC CGTGCTCGAC
AGCTTCGGCA CACCCCACAC CGACAAGACC ACCACCGGTC CCACGCACAT CTTCAACCTG
GGCCACGGCA TCAGCCAGTT CACCCCGCCC GAACACGTGG CCGCGCTGGT GGAAGCCGTG
CATGGCTATT CACGCAGCCT GCGGCAGCGG TGA
|
|---|
| Protein sequence | MSFAPLQNDT FLRACRRQAT DYTPLWLMRQ AGRYLPEYKA TRAKAGSFMG LATNVEYATE
VTLQPLERFP LDAAILFSDI LTVPDAMGLG LSFAEGEGPR FAKAVRDEAD VAALAVPDLD
KLRYVFDAVT SIRRALNGRV PLIGFSGSPW TLACYMVEGK GSDDYRLVKT LMYSRPDLMH
RILAVNADAV AAYLNAQIDA GAQAVMVFDS WGGVLADGCF QDFSLEYTRR VLAQLKRTGV
DGQDVPRIVF TKGGGIWLDD MKDIDCEVLG LDWTAHLGKA RAIVGGQVGG PGKALQGNID
PNVLFAPSAQ IVTQVRAVLD SFGTPHTDKT TTGPTHIFNL GHGISQFTPP EHVAALVEAV
HGYSRSLRQR
|
|---|
| |