| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dtpsy_3028 |
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| Symbol | |
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| ID | 7385474 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidovorax ebreus TPSY |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011992 |
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| Strand | - |
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| Start bp | 3226313 |
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| End bp | 3232243 |
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| Gene Length | 5931 bp |
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| Protein Length | 1976 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 643656338 |
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| Product | excinuclease ABC, A subunit |
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| Protein accession | YP_002554461 |
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| Protein GI | 222112197 |
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| COG category | [L] Replication, recombination and repair
[P] Inorganic ion transport and metabolism |
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| COG ID | [COG0178] Excinuclease ATPase subunit
[COG1121] ABC-type Mn/Zn transport systems, ATPase component |
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| TIGRFAM ID | [TIGR00630] excinuclease ABC, A subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.500259 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGCCATC ACCTGCGTGA CCGGCTGTGG TGTGGTGTCC ACCCGGTCGA TGCGGAATCC
GGCTCGTCCC TAGAATGTTC CGCCTCATTG CAGAAAGACC CGCTCATGAC CCAGGGACTG
ATCCGTATCC ACGGCGCGCG CCAGCACAAC CTCAAGAACA TCGACCTGGA CATCCGCACG
GGCGAGCTCA CCGTGGTCAC CGGCCCCAGC GGCTCCGGCA AGTCCAGCCT GGTGTTCGAC
ACGCTGTATG CCGAGGGTCA GCGCCGCTAT GTGGAGACCT TCAGCGCCTA CGCGCGCCAG
TTCCTGGACC GCATGGACAA GCCCGCCGTG GACAAGGTGG AGGGTGTGCC CCCGGCCATC
GCCATCGACC AGACCAACCC GGTGCGCTCT TCGCGCTCCA CCGTGGGCAC GATGACCGAG
CTGAACGACC ACCTCAAGCT GCTGTTCGCG CGCGCCGGCC AGCTCTTCGA CCGCGAGACG
GCGCTGCCTG TGCGCCACGA TTCGCCGGAC ACCATCCATG CCGAGTTGCA GCGGCGCTGC
GCCGCCGAGG ACGACCCGCG CATCGTGCTC ACTTTTCCCG TGGAACTGCC CGTGGGCACC
ACCGCGGAAC AGCTGGAGCA ATGGCTGTCG GCCAGCGGCT TCACCAAGGT GCAGGCCGAG
CGCGAGGTGG CCACGCCCAC AGGCCCGCGC AAGCTGCTGG ACGTGGTGGC CGACCGCTTC
CGCATGGGCA ACGTGGAGCG CGCGCGCGCG GTCGAGGCGA TCGAGGTCGC GCTCAAGCGC
GGCGGGGGGC GGCTCAACGT CTATCGCCTG CGGGACGATG GCGAAGCGGA CCTGTGGCGC
TTCTCCACCG GCCTGCATTG CCCCGAGAGC GACCTGCGCT ACGCCGAACC CATCGCGTCG
ATGTTCTCGT TCAACTCCGC CGTGGGCGCC TGCGACACCT GCCGGGGCTT CGGCCGCGTG
ATCGGCGTGG ACTACGGCCT GGTCATTCCC AACGACAAGC TCACGCTGCG CGCCGGTGCG
ATCAAGACCA TCCAGACCCC CGCCTGGAAA GAAGCGCAGG ACGACCTCAT GCGCCATGCC
GAGGCCGCCG GTATCCCGCG CGACACGCCC TGGTACAAGC TCACCGCGGA GCAAAAGCAC
TGGGTGATCG AAGGCACGCC CGGCTTCAAG AACGGCAACT GGAACAAGCA GTGGTATGGC
ATCCGCCGCT TCTTCGAGTA CCTGGAGAGC AAGGCCTACA AGATGCATAT CCGCGTGCTG
CTGTCCAAGT ATCGCAGCTA CACGCCATGC CCTGTGTGCG CCGGCGCGCG ACTGAAGACC
GAGAGCCTGC TGTGGCGGCT GGGCAGCAAG GAGGACGCCG ATGCCGTGCT CGACCCCGCG
CAGCGCTTCC TGCCGCAGGG CGTGGCCTGG ACGCGCGCGC AGCTGGAGGC GCTGCCCGGC
CTGTGCCTGC ACGACCTGAT GTTGCTGCCC ATCGACCGCC TGCGGCGCTT CTTCGCGCGC
ATGGCGGGTG TGCAGAATGC TCCTGTTTCA ATAGCTGGTG GCGCTCTCCA GATAAGCGCT
ACAGGCCAAA ACGACTCTCA GGCTGGCGAT CGCCAGGCGC TGCAGTTGCT GCACGACGAG
ATCGCCACGC GCCTCAAGTA CCTGTGCGAC GTGGGCATCG GCTACCTCAC GCTGGACCGG
CAAAGCCGCA CGCTGTCGGG CGGCGAGGTG CAGCGCATCA ACCTGACCAC GGCGTTGGGC
ACCTCGCTGG TGAACACGCT GTTCGTGCTC GACGAGCCCA GCATCGGCCT ACACCCGCGC
GACATGCACC GCATCACCGA GGCCATGCTG CGCTTGCGCG ACGCGGGCAA CACGCTCGTC
GTGGTGGAGC ACGACCCGGC CGTGATGCTC GCGGCCGACC GCGTCCTCGA CTTCGGCCCC
GGCCCCGGCG AGCGCGGCGG GCAGATCGTG TTCGACGGCA CGGTGGGCGA ACTGCGCCGC
GCGCCCACGC TGACCGGCCA GTACCTCGGC GGGCACAAAC AGATCGGCAC CGGGCTCAAG
CGCCTGGTGA CGGATGCGAC GCCGCGCCTG GTGCTGGAGG GTGCGCGCGA GCACAACCTG
CGCGATGTGA ACGTGGAGTT CCCGCTGCAG CGCCTGGTCA CCATCACCGG CGTGTCGGGC
TCGGGCAAGT CCACGCTGAT CCAGGACGTG CTGGCGTCCG CGCTCATGCG CCACTTCGGC
AAGGCCACGG AGACGCCCGG CGCGCACGAG CGCCTGCTGG GCGCCGACCA CCTGAGCGAC
GTGGTGTTCG TGGACCAGTC GCCCATCGGC AAGACGGCGC GCTCCAACCC CGTGAGCTAT
GTGGGTGCGT GGGATGCCAT CCGCGAGCTG TTCGCCGTGG CGCCGCTGGC CCGGGAGCGC
AGCTACACCG CGGCCAAGTT CAGCTTCAAC TCGGGCGACG GGCGCTGCCC CACCTGCGGC
GGCTCGGGTT TCGAGCATGT GGAGATGCAG TTTCTGTCGG ACGTGTACCT GCGCTGCCCC
GACTGCGACG GCAAGCGCTA CCGGCCCGAG ATCCTGGAGG TGCGCATCGA ACGCGGTGGC
AGGCTGTTCA ACGTGGCGGA CGCGCTGGAC CTCACCGTGC ACGAGGCGGC AGAGCTGTTT
GCGAAAGACC GCGAGGTGAT CCGCGCGCTG CAGCCCATCG TGGACGTGGG GCTGGAGTAC
GTGAAGCTGG GCCAGCCTGT GCCCACGCTG TCGGGCGGCG AGGCGCAGCG CTTGAAGCTG
GCGGGCTTCC TGGCCGAGGC GGCCCGGAGC CAGGCCAAGT CGCGCCAGCC GCTGGCCCGC
AAGGGCACGC TGTTCCTGTT CGACGAGCCC ACCACCGGCC TGCACTTCGA CGACATCGCC
AAGCTCATGC GCGCGCTGCG CAAGCTGCTG GACGCGGGGC ATTCGCTCAT CGTCATCGAG
CACAACCTGG ACGTGATCCG CGCCAGCGAC TGGCTCATCG ACCTGGGGCC CGAGGGCGGC
GACGCCGGCG GCCAGGTGGT GGCCGAGGGC GCACCCGAGG AGGTGCGTCA GCACCCCACG
TCGCACACCG CGCAGGCGCT GCGCGAGTAC GAACTGGCGC TGGGCGAGGG CGGCCATTCG
GTGCACGAGC AGCAGGCGGT GCTACGAAAA GAGAAGCTAC TCGCGCTGGA TGGAAAAGCG
CCAGAGGTCA AAAACGCCAT AGAGATCGTG AACGCGCGTG AGCACAACCT GCGGCACCTC
ACGCTGGACA TTCCGCGCGG CCGGTTCAAC GTGATCACCG GCGTGAGCGG CTCGGGCAAG
TCCACGCTGG CGTTCGACAT CCTGTTCAAC GAAGGCCAGC GCCGCTACCT GGAGAGCCTG
AACGCCTACG CCCGCAGCAT CGTGCAGCCG GCCGGGCGGC CCGAGGTGGA CGCGGTGTAC
GGCATACCGC CCACCGTGGC CATCGAGCAG CGCCTGTCGC GCGGCGGGCG CAAGAGCACC
GTGGGCACGA CCACCGAGGT GTGGCACTTT CTTCGCCTGC TGTATGTGAA GCTGGGCGTG
CAGCACTGCG TGCACGACGG CGCGGCGGTG CAGCCACAGA CGGCCGAGAG CATCGCCGCG
CAACTGCTGC GCGACTACCG CGGCCAGCAC ATCGGCTTGC TCGCGCCGCT GGTGGTGAAC
CGCAAGGGCG TCTATACCGA ACTGGCCGAC TGGGCGCGCC CGCGGGGCTA CACGCACCTG
CGCGTGGACG GCCACTTCCT GCCGACCGCG GGTTTTCCGC GCATCGACCG CTTCAAGGAG
CACACCATCG AGCTGCCCGT GGCCAGCGTG GACGTGTCGC CGGAGCATGA AGACACGCTG
CGCACGCAAC TGTCCAAGGC GCTGGAGTTG GGCAAGGGCG TGGTGCATGT GCTGAGCGGC
CTGGACGGCC TGCAGCAGGC GCTGCAGGAC GGAGCGCCCA CGGCGCACAT CGGGCGGCTG
CAGGTGTTTT CCACCAAGCG CGCCTGCCCC GTGTGCGCCA CCAGCTATGC CGAGCTGGAC
CCGCGCCTGT TCTCCTACAA CAGCAAGCAT GGCTGGTGCC CCGACTGCGT GGGCACGGGC
GTCAAGCTGA CATCGGCGCA GCGCAAGGTG TTGGACGACT CCGTGCAGTC GGAGGACAAC
CGCGGCCGCG AGCAAACCTT TGCCGAGCCC GAGATGGAGG ACGTGGCCGA CGCCGCCTGT
CCCACCTGCC AGGGCACGCG CCTGAACCCG GTGGCGCGCG CCGTGCAGTT CGCCGGCACG
CCGATCACCG AGGTGGCGCG CCTGTCGGTG GCCGAAGTGC GGCAGTGGAT CGCCGGGCTG
CAGCTGTCGG GGCGCGAGGC GGAGATTGCG CGCGACCTTG TGCCCGAGAT CCAGAGCCGG
CTGGAATTCC TGGAGGAAGT CGGGCTGTCC TACCTCACGC TGGACCGCGG CGCGCCCACG
CTCAGCGGCG GCGAGGCGCA GCGCATCCGC CTGGCGGCGC AGCTCGGCAG CAACCTGCAG
GGCGTGTGCT ATGTGCTGGA CGAGCCGACC ATCGGCCTGC ACGCGCGCGA CAACCAGATC
CTGCTGAACG CCCTGCACAA GCTCGGCGAC AAGGGCAACA CCCTGGTGGT GGTGGAGCAC
GACGAGGACA CCATCCGCCG CGCCGACCAC ATCATCGACA TCGGCCCCAG CGCGGGCAAG
CGCGGCGGGC GCCTGGTGGC CCAGGGCACG GTGGCCGACG TGCAGGCGGC TGCGGACTCG
CAGACCGGCC GCTACCTGCT GCATGCCATG CGCCACCCGC TGCAGGCGCG TCGCCCGGTG
GATGCTATTG AAAAAGTAGC TGGTGGCGCA CATCCGGCGG GCGCTGGAGG CCAAAACGAT
GCGGAACCCC TGCGCTGGCT CACCGTGCAC GGCGCGCACC TGCACAACCT GCAGCAGGTC
ACTGCACGCG TGCCGCTGCA GCGGCTGGTG GCCGTCACGG GCGTGAGCGG CTCGGGCAAG
TCCACGCTGG CACGCGACGT GCTGCTGGCC AACGTGGCGG CCTGGGTGGG CCAGCGCGCC
ACCAAGGCCG GGCGCGACGC CATGGATGCG GGCAAGGCGC CGCCGCTGGC CGGCTGCACC
GGCCTGTCGG GCTTCGAGAC CATCGACCGC GTGCTGGAGG TGGACCAGAC GCCCATCGGC
AAGACGCCGC GCAGCTGCCC CGCCACCTAC ATCGGCTTCT GGGACACCAT CCGCAAGCTG
TTCGCCGAGA CCCTGGAGGC CAAGGCGCGC GGCTATGCTC CCGGGCGCTT CAGCTTCAAC
ACCGGCGAGG GGCGCTGCCC GGCCTGCGAA GGGCAGGGCG TGCGCACCAT CGAGATGAGC
TTCCTGCCCG ATGTGAAGGT GCCCTGCGAG GTCTGCCACG GCGCGCGCTT CAACCCCGAG
ACGCTGGCCG TCACCTGGCG CGGCAAGAGC ATCGGCGATG TGCTGCAGAT GGAGGTGGAC
GAGGCCGTGG AGTTCTTCGC CAGCATGCCC GGCATCGCGC ACCCACTGCA GCTCTTGAAG
GACGTGGGCC TGGGCTACCT CACACTGGGC CAGCCCAGCC CCACGCTCAG CGGCGGCGAG
GCACAGCGCA TCAAGCTGGT GACCGAGCTC ACCAAGGTGC GCGACGACGT AGGCCGGCGC
GGGCAGAAAA GCCCGCACAC GCTCTACGTG CTGGATGAGC CCACCGTGGG CCTGCACATG
GCCGACGTGC ACAAGCTCAT CCAGGTGCTG CACCGCCTGG TGAACGGCGG CCACAGCGTG
GTCGTGATCG AGCACGACCT GGACGTGATT GCCGAGGCCG ACTGGATCAT TGACCTGGGC
CCCGAAGGCG GCAAGGAGGG CGGGCGCATC GTGGCCGCGG CCACGCCGGA GGACGTGGTG
CGCCAGGGCA CGCACACCGG CAAGGCGCTG GCACCGGTGT TGGCGCGCTG A
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| Protein sequence | MRHHLRDRLW CGVHPVDAES GSSLECSASL QKDPLMTQGL IRIHGARQHN LKNIDLDIRT
GELTVVTGPS GSGKSSLVFD TLYAEGQRRY VETFSAYARQ FLDRMDKPAV DKVEGVPPAI
AIDQTNPVRS SRSTVGTMTE LNDHLKLLFA RAGQLFDRET ALPVRHDSPD TIHAELQRRC
AAEDDPRIVL TFPVELPVGT TAEQLEQWLS ASGFTKVQAE REVATPTGPR KLLDVVADRF
RMGNVERARA VEAIEVALKR GGGRLNVYRL RDDGEADLWR FSTGLHCPES DLRYAEPIAS
MFSFNSAVGA CDTCRGFGRV IGVDYGLVIP NDKLTLRAGA IKTIQTPAWK EAQDDLMRHA
EAAGIPRDTP WYKLTAEQKH WVIEGTPGFK NGNWNKQWYG IRRFFEYLES KAYKMHIRVL
LSKYRSYTPC PVCAGARLKT ESLLWRLGSK EDADAVLDPA QRFLPQGVAW TRAQLEALPG
LCLHDLMLLP IDRLRRFFAR MAGVQNAPVS IAGGALQISA TGQNDSQAGD RQALQLLHDE
IATRLKYLCD VGIGYLTLDR QSRTLSGGEV QRINLTTALG TSLVNTLFVL DEPSIGLHPR
DMHRITEAML RLRDAGNTLV VVEHDPAVML AADRVLDFGP GPGERGGQIV FDGTVGELRR
APTLTGQYLG GHKQIGTGLK RLVTDATPRL VLEGAREHNL RDVNVEFPLQ RLVTITGVSG
SGKSTLIQDV LASALMRHFG KATETPGAHE RLLGADHLSD VVFVDQSPIG KTARSNPVSY
VGAWDAIREL FAVAPLARER SYTAAKFSFN SGDGRCPTCG GSGFEHVEMQ FLSDVYLRCP
DCDGKRYRPE ILEVRIERGG RLFNVADALD LTVHEAAELF AKDREVIRAL QPIVDVGLEY
VKLGQPVPTL SGGEAQRLKL AGFLAEAARS QAKSRQPLAR KGTLFLFDEP TTGLHFDDIA
KLMRALRKLL DAGHSLIVIE HNLDVIRASD WLIDLGPEGG DAGGQVVAEG APEEVRQHPT
SHTAQALREY ELALGEGGHS VHEQQAVLRK EKLLALDGKA PEVKNAIEIV NAREHNLRHL
TLDIPRGRFN VITGVSGSGK STLAFDILFN EGQRRYLESL NAYARSIVQP AGRPEVDAVY
GIPPTVAIEQ RLSRGGRKST VGTTTEVWHF LRLLYVKLGV QHCVHDGAAV QPQTAESIAA
QLLRDYRGQH IGLLAPLVVN RKGVYTELAD WARPRGYTHL RVDGHFLPTA GFPRIDRFKE
HTIELPVASV DVSPEHEDTL RTQLSKALEL GKGVVHVLSG LDGLQQALQD GAPTAHIGRL
QVFSTKRACP VCATSYAELD PRLFSYNSKH GWCPDCVGTG VKLTSAQRKV LDDSVQSEDN
RGREQTFAEP EMEDVADAAC PTCQGTRLNP VARAVQFAGT PITEVARLSV AEVRQWIAGL
QLSGREAEIA RDLVPEIQSR LEFLEEVGLS YLTLDRGAPT LSGGEAQRIR LAAQLGSNLQ
GVCYVLDEPT IGLHARDNQI LLNALHKLGD KGNTLVVVEH DEDTIRRADH IIDIGPSAGK
RGGRLVAQGT VADVQAAADS QTGRYLLHAM RHPLQARRPV DAIEKVAGGA HPAGAGGQND
AEPLRWLTVH GAHLHNLQQV TARVPLQRLV AVTGVSGSGK STLARDVLLA NVAAWVGQRA
TKAGRDAMDA GKAPPLAGCT GLSGFETIDR VLEVDQTPIG KTPRSCPATY IGFWDTIRKL
FAETLEAKAR GYAPGRFSFN TGEGRCPACE GQGVRTIEMS FLPDVKVPCE VCHGARFNPE
TLAVTWRGKS IGDVLQMEVD EAVEFFASMP GIAHPLQLLK DVGLGYLTLG QPSPTLSGGE
AQRIKLVTEL TKVRDDVGRR GQKSPHTLYV LDEPTVGLHM ADVHKLIQVL HRLVNGGHSV
VVIEHDLDVI AEADWIIDLG PEGGKEGGRI VAAATPEDVV RQGTHTGKAL APVLAR
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