| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dtpsy_3001 |
|---|
| Symbol | |
|---|
| ID | 7385446 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax ebreus TPSY |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011992 |
|---|
| Strand | + |
|---|
| Start bp | 3196245 |
|---|
| End bp | 3197951 |
|---|
| Gene Length | 1707 bp |
|---|
| Protein Length | 568 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 643656311 |
|---|
| Product | beta-lactamase domain protein |
|---|
| Protein accession | YP_002554434 |
|---|
| Protein GI | 222112170 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0491] Zn-dependent hydrolases, including glyoxylases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCACGCC TGAGCCAACA ACTACACCCC CACCGCGAAC CGGTCACCCC CCTTCACGCG
GCCACCGTGC TGCTGCTGCG CGATGCGCCC CAACCCGGCG GCGGCAGCAC GCTGCAGGTG
CTGATGACGC GCCGCTCCGA CAAGGCCAGC TTCGTGCCCG GCGCCTACGT GTTCCCCGGC
GGCGGCATCG AGACGCAGGA CGCCGACCCC GCCACCCACG CCCTGGCCGA CCACCGCCCG
GCGCAGACCG CCGCGCGCCT GACCGACGCG CTGGCCGCCA TCCGCGAAAG CTTCGAGGAG
CTGGGCGTGC TGCTGGCGCG CCACGGCGAC GGCCGCTGGG CCGGGGCCGA CGACATCGCC
GCCATCGCAC GCCAAGCACC GGCCGGCACC ACGTTCGCCG CGCAATGCGC CGCGCGCGGC
CTGCGCCTGG CGGCCGACCG CGTGTACTGG CTGGCCCACT GGACGGCCGA CCGCAATTTA
CCGAAGCGCT TCGCCGTGCC CTTTCTCGTC GCGCGCATGC CCGAGGGGCA GGAGCCCGTG
GCCGACGAGT CCGAGCAGTT CGAGCCCGTG TGGGTGAGCC CGGCCGACGC GCTGGCGCGC
CACGAGGCGG GGCAGTTCTT CATGATCTTC CCCACCATCC GCACGCTGCA GCGCCTGGCG
CAGTTTGCGG ACGTGGACGC CGTGCTCGCC GCCGTCGCGC ACGAGCAGCC TCTGTGGGTC
AGCAGCCCGC GCTCGGGCCT GCTGGGCGGC AAGGAGGCGC GCTTCATGGA GGACGAGGCG
CCTTTCGGCG AGCTAGCGCT GGTCACGCCC ACGGGCCGCG GCGAGCATGC GCTGGACTGG
CAGAGCGAGA CGCCCGTGCC GCTGCTGAAG AACGTGCAGC GCCTCACCGC CCCCAACCCC
GGCGTGATGA CCGGCCCCGG CACCAACAGC TACCTGGTGG GCGACCCGGC CACGGGCTAC
ATCGCCATCG ACCCCGGTCC GGCCGACACC GAGCACCTGG ACAAGCTCTG GCGCGCCGCG
GGGGGGGACA TCCGCATGAT CGTGTGCACC CATTCGCACC CCGACCACTC CCCCGGCGCC
GCGCCGCTGC AGGCGATGTG CGTGCGCGCC GGGCGCGCCG CACCGCCCAT CCTGGGACTG
CCCTCGGCGC CCACGGCGCG TGCAGCCAGC CAATTCACGC CCGACCGTTC GCTACAAGAT
AATGAGCTTC TCACGCTTGC TGGACAAGGG CCGGATGGCG AAATCACCCA TACCCTGCAG
GTCATCCACA CGCCCGGCCA TGCAGCCAAC CATCTGTGCC TGCTGCTGCG CGAGGACGGG
CTGCTGTTCT CGGGCGACCA CATCCTGAAC GGCAGCACCA CGGTCATCGA CCCGCCCGAC
GGCAACATGG CGGACTACCT GGATTCGCTG GACCGGCTGG ACGCGCTGTG CGCCGAGCAC
GGCGCCGAAT TCATCCTGCC CGCGCACGGC TACGTGCTGG GAGGCCCGGA AGATGGGGCG
CGCACCGCCA TCGCACGCCT GAAGGCCCAC CGCCTGGCGC GCGAGGCCAA GGTGCTGGCC
GCCATGCAGG CCCAGCCCGA AGGCAGCATG GACGACTGGG TGCGCCTGGC CTACGACGAC
GTGCCGCCGC GCATGTGGCC CATCGCGCAG CGCTCGCTGC TCGCGCATGT GGAGCGCATC
CGCATGCTGG AGCCCGGCAA TGACTGA
|
|---|
| Protein sequence | MPRLSQQLHP HREPVTPLHA ATVLLLRDAP QPGGGSTLQV LMTRRSDKAS FVPGAYVFPG
GGIETQDADP ATHALADHRP AQTAARLTDA LAAIRESFEE LGVLLARHGD GRWAGADDIA
AIARQAPAGT TFAAQCAARG LRLAADRVYW LAHWTADRNL PKRFAVPFLV ARMPEGQEPV
ADESEQFEPV WVSPADALAR HEAGQFFMIF PTIRTLQRLA QFADVDAVLA AVAHEQPLWV
SSPRSGLLGG KEARFMEDEA PFGELALVTP TGRGEHALDW QSETPVPLLK NVQRLTAPNP
GVMTGPGTNS YLVGDPATGY IAIDPGPADT EHLDKLWRAA GGDIRMIVCT HSHPDHSPGA
APLQAMCVRA GRAAPPILGL PSAPTARAAS QFTPDRSLQD NELLTLAGQG PDGEITHTLQ
VIHTPGHAAN HLCLLLREDG LLFSGDHILN GSTTVIDPPD GNMADYLDSL DRLDALCAEH
GAEFILPAHG YVLGGPEDGA RTAIARLKAH RLAREAKVLA AMQAQPEGSM DDWVRLAYDD
VPPRMWPIAQ RSLLAHVERI RMLEPGND
|
|---|
| |