Gene Dtpsy_2982 details

Gene Information

• Locus tag: Dtpsy_2982
• Symbol: murD
• ID: 7385427
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Acidovorax ebreus TPSY
• Kingdom: Bacteria
• Replicon accession: NC_011992
• Strand: -
• Start bp: 3175791
• End bp: 3177689
• Gene Length: 1899 bp
• Protein Length: 632 aa
• Translation table: 11
• GC content: 71%
• IMG OID: 643656292
• Product: UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
• Protein accession: YP_002554415
• Protein GI: 222112151
• COG category: [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG0771] UDP-N-acetylmuramoylalanine-D-glutamate ligase
• TIGRFAM ID: [TIGR01087] UDP-N-acetylmuramoylalanine--D-glutamate ligase

Plasmid Coverage information

• Num covering plasmid clones: 11
• Plasmid unclonability p-value: 0.0262085
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAACACTG GCCACCACGA TCCCCTGCAC CCCGACGCAC TCGGCGCCGC AGCGACGACT 
GTGCCCCCGG CGCCCCCGTC CACTCCCACG CCCGGGGAGC GGGACGACGC GTTGCCGCGG 
GATGCGGCGC ACGACAGTCC GCCGCAGGAT CTATCGCCCT TGCCAGCGCC CGCGCAAGAT 
GCAGCGGCGC GCTATGACTA CACCGCACCC GCGGTGTCAG CCGCGGCCGC CGCGGCCGAG 
TTCGTGGCGC GCATCTTTGC CGACGCGGCT CCGGCAGACG GTGGCGCTGG CACGTCTGCT 
GAAGACACCC CCGTTTCTCC GGCTGCGGAC CACGCCGTTG AGGAGCCTGC CGTCGCGTCC 
GAGGAGGCCC CGCAGGCGCC GCCCGCGCTT GCCGGCAAGC AGGTGCTGGT GCTGGGTCTG 
GGCGCCTCGG GCCTGGCCAT GGCGCGCTGG TGTGTGCGCT GTGGTGCGCA GGTCACCGTG 
GCCGACACGC GCAGCAGTCC GCCGCAGCTG GCGGTGCTGC GCGCAGAACT GCCGCAGGTG 
GAGTTCATCG CCGGCGCCTT CGATGAGACC CTGGTGCGGG GGCGCGCGCT GCACGCGGTA 
TACCGTTCGC CAGGTCTGAG TCCGAATGAG ATTGCTCCTG TTGTTATAGC TGCTCGCGCC 
CGCCAGATAA GCGTGGAAGG CGAATTGGGT TTGTATGCGC AGGCGCTGCG CGAGCTGCGC 
GCCGGTCAGG GCTATGCGCC CGCGGTGCTG GCCATCACCG GCACCAATGG CAAGACCACC 
GTGACCTCGC TCACGGGGCT GCTGGTGGAG TGCGCGGACA AGCGCGTGGC GGTGGCCGGC 
AACATCGGCC CCACGCTGCT GGATACGCTG GCGCAGCACA TCGACGCGGG CACGCTGCCC 
GAGGTGTGGG TGCTGGAGCT GTCGAGCTTT CAGCTCGATG GCGTGCAGGG CTTCGAGCCC 
ACGGCCGCGG CCGTGCTCAA CATCACGCAG GACCACCTGG ACTGGCACGG CAGCCTGCAG 
GCCTACGCAC AGGCCAAGGG GCGCATCTTC GGCGAAACCG GCCTCATGGT GCTCAACCGC 
GAGGACGCGG AAGTCATGGC CCTGCTGCCG CCGCCAGTGC GCGTGAAGCT GCAGAAGCCC 
CAGTTGCGCG CACACGTGAC CTTCGGTGGC GACATGCCGC AGCGCCCGGG GGACTTCGGC 
ATCGAGGTGG TCAGCGGCAT GGCCTGGCTG GTGCGTGCAC ACGAAGCGGA CGAAACGGCC 
AAGCGCGGCA AGGCGCAGGA CGCCGAGCTG CACATCCAGC GCCTGATGCC CGCCGACGCG 
CTGCGCATCC GCGGGCGGCA CAACGCCATC AATGCCCTGG CTGCGCTGGC GCTGGCCCAG 
GCTGCGGGCT GCCCGCTCGC GCCCATGCTC TACGGCCTGC GCGAATACCG CGGTGAGCCG 
CACCGCGTGG AGCCCGTGGG CATCGTGCGC GAGGTGGAGT ACTTCGACGA CAGCAAGGGC 
ACCAACGTGG GCGCCACGGT GGCTGCGCTG ACCGGGCTGG GCGCCGACCG GCGCCTGGTG 
GTGATCCTGG GTGGCGACGG CAAGGGTCAG GACTTCTCGC CGCTGGCCGC GCCCGTGGCG 
CGCTATGCGC GCGCGGTGGT GTTGATCGGG CGCGACGCGC CGCAGATCCG CGCCGCGCTG 
CAGGGCTGCG GCGTGCCGCT GCAGGACGCC GCCACGCTGC CCGAGGCCGT GCAGTTGGCC 
ACACAGCGCG CCCATGTGGG CGACGCCGTG CTGCTGTCGC CCGCCTGCGC CAGCCTGGAT 
ATGTTCGACA ACTACGCGCA CCGCGCTCGC GTTTTCTGCG AAGCCGTGCA GGCGCTGGCC 
GAAGACGCCG GCCAGACGCT GGAAGGAGGG ACGGCATGA 

 

Protein sequence

MNTGHHDPLH PDALGAAATT VPPAPPSTPT PGERDDALPR DAAHDSPPQD LSPLPAPAQD 
AAARYDYTAP AVSAAAAAAE FVARIFADAA PADGGAGTSA EDTPVSPAAD HAVEEPAVAS 
EEAPQAPPAL AGKQVLVLGL GASGLAMARW CVRCGAQVTV ADTRSSPPQL AVLRAELPQV 
EFIAGAFDET LVRGRALHAV YRSPGLSPNE IAPVVIAARA RQISVEGELG LYAQALRELR 
AGQGYAPAVL AITGTNGKTT VTSLTGLLVE CADKRVAVAG NIGPTLLDTL AQHIDAGTLP 
EVWVLELSSF QLDGVQGFEP TAAAVLNITQ DHLDWHGSLQ AYAQAKGRIF GETGLMVLNR 
EDAEVMALLP PPVRVKLQKP QLRAHVTFGG DMPQRPGDFG IEVVSGMAWL VRAHEADETA 
KRGKAQDAEL HIQRLMPADA LRIRGRHNAI NALAALALAQ AAGCPLAPML YGLREYRGEP 
HRVEPVGIVR EVEYFDDSKG TNVGATVAAL TGLGADRRLV VILGGDGKGQ DFSPLAAPVA 
RYARAVVLIG RDAPQIRAAL QGCGVPLQDA ATLPEAVQLA TQRAHVGDAV LLSPACASLD 
MFDNYAHRAR VFCEAVQALA EDAGQTLEGG TA