| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dtpsy_2978 |
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| Symbol | ddl |
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| ID | 7385423 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidovorax ebreus TPSY |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011992 |
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| Strand | - |
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| Start bp | 3170795 |
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| End bp | 3171793 |
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| Gene Length | 999 bp |
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| Protein Length | 332 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 643656288 |
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| Product | D-alanine--D-alanine ligase |
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| Protein accession | YP_002554411 |
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| Protein GI | 222112147 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1181] D-alanine-D-alanine ligase and related ATP-grasp enzymes |
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| TIGRFAM ID | [TIGR01205] D-alanine--D-alanine ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.00577366 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCCAAA ACGACCCCAA GATTGATGTG AAGGCGCTGG GCAAAGTGGC CGTGCTCATG
GGGGGCACGT CGGCCGAGCG TGAGGTGTCG CTGATGTCGG GCGGCGGCGT GCTGCAGGCG
CTGCGCTCGC GTGGCGTGGA CGCGCATGCG TTCGACCCCG CGCACAGTGA TCTGTCGGAG
CTCAAGGCCC ACGGCTACAG CCGCTGCTTC ATCGCGCTGC ACGGCCGCCA TGGCGAGGAC
GGTACGGTGC AGGGCGCGCT GGAGCTGCTG GGCATTCCGT ACACCGGTCC CGGCGTGATG
GCGTCCAGCA TCGCCATGGA CAAGATCATG ACCAAGCGCA TCTGGCGCGC GGACGGCCTG
CCCACGCCAG ACTGGCGCCT GGTGTCCAGC AGTGCGGAGA CGGCCCAGGC CTTCCAGGAG
CTGGGCGCGC CGATGATCGT CAAGCCCTCG CGCGAGGGCT CCACCATCGG CCTGACCAAG
GTCACTTCGC TGGGGCAGTG CGAACAGGCG TATCGGCTGG CCGCGCAGCA TGACCCCGAG
GTGCTGTGCG AGCAGTTCAT CGATGGTGAC GAGACCACCT GTCCCATACT GGGCCAAGGC
GCCGAGGCGC GCGCGCTGCC GGTGATCCGC ATCGAGGCGC CGCAAGGCAA CTACGACTAC
CAGAACAAAT ACTTCACCGA CGTCACGCAG TACCACTGCC CGAGCGGCCT GCCCGAGGCC
GAGGAGCGCG AGATCCAGCG CATCGTCGTG CAGGCTTACC GTACGCTGGG TTGCCGCGGC
TGGGCGCGCG CCGACATCAT GATCCGCGCG AGCGATCGCA AGCCCTTCCT GCTGGAAATC
AACACCTCGC CTGGCATGAC CGGCCACTCG CTGGTGCCGA TGTCGGCCAA TGCCAGCGGC
ATCAGCTACC CCGACCTGTG CCTGCGCATC CTGGCGAGCG CGTCGCTGGA CGCGCTGCAG
GGCCGGGCCG GTGCGGCAGG AGGACGGGAG CCGGTATGA
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| Protein sequence | MSQNDPKIDV KALGKVAVLM GGTSAEREVS LMSGGGVLQA LRSRGVDAHA FDPAHSDLSE
LKAHGYSRCF IALHGRHGED GTVQGALELL GIPYTGPGVM ASSIAMDKIM TKRIWRADGL
PTPDWRLVSS SAETAQAFQE LGAPMIVKPS REGSTIGLTK VTSLGQCEQA YRLAAQHDPE
VLCEQFIDGD ETTCPILGQG AEARALPVIR IEAPQGNYDY QNKYFTDVTQ YHCPSGLPEA
EEREIQRIVV QAYRTLGCRG WARADIMIRA SDRKPFLLEI NTSPGMTGHS LVPMSANASG
ISYPDLCLRI LASASLDALQ GRAGAAGGRE PV
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