| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dtpsy_2742 |
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| Symbol | |
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| ID | 7385509 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidovorax ebreus TPSY |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011992 |
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| Strand | - |
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| Start bp | 2918744 |
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| End bp | 2921428 |
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| Gene Length | 2685 bp |
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| Protein Length | 894 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 643656050 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_002554176 |
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| Protein GI | 222111912 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGCCCA CGCCCGGCAG GCGCCTGCAC CTGATCACCT GGGGGGTGGT GGCTGCGCTG
CTCGCAGGGC TGGCGGTGGC GGTGGCCGTG CTGCTGTGGC ATACGCGTGC GGACGCGCTG
GACGTTGCCG AGGCGCGCGT CACCCGTTTT GCCGCGGGGG CGGAGGCGGG CATGAACCGC
ACGCTGCTCT CTTTCGACGT GCTGTTGGCG CATACGGAAG AGCTGCTGGC CCTGCGCGCA
CGCGACCGTG CGGGCCTTGA CGTGGTGGGG GCCGACACGC TGCTGCGCGG CGTGGCGCGG
CAGAACCTCC TGCTGCGCTA CGTGGCGCTG CTCGATGCGC GGGGCGCCGT GCTGGCATCT
TCGGCGTCCA CCGGCGAACT GGACGGCGTG GAGCTGCCCG AAGGCTTCCT GGCGGCCGCC
CTCGCGCCCG CGGTGGCCAC GCTGTCCGTC AGCCAACCCG TGGTGAGTCC TACCAGTTCC
GAGCGGGTGC TGTACATGGC GCGCCAGTTG CGCATGGGCG ACGGCACGCC GCTGCTGGTC
GTCGCGCAGG TGCCGACGGA GGCGCTGGTG GCGGTGCTGA TGCAGGGGCT GGAGGTTCCC
GACATGGAAT TGACGCTGGA GCGCACGCAA GGCGTGCTGC TGCTGGGCGT GGAGGCGCCA
CAGGGGACCG TGGAGCGCCA GGAGCGCGCA GCGCCGGCCC TGCAGGAAGG CGGCGCGGAC
GATGGCGTGC ACGCATGGCA GGCCAGCGCA CGGCTGTCGG GCAAGCCGGC TATGGTGGTG
GCGCGGCCGC TCATCTACCC CGATCTGTGG GCCACCGTCA GCCTGCCGCG CGACGCGGCG
CTGGCGGGCT GGCGGCAGGA GGCGCAGACG GTGCTGTTCG GCGCGCTGCT GTTTGCGGCC
ACGGTGGTGG CCGCGGGAAG CGTGGTCGCC CTGTACTTGC GGCGCATGCA CAGTGCGCGG
CGGGTGGTGG CGCGCTCCAA GGCCACGCTG GACCAGGCGC TCGAAGCCAT GGTGAGCGGC
TTCGTGTTGC TGGACGCACA GCGCTGCGTG GTGCAGTGGA ACCTGCGCTT CGAGGAGATG
TTCCCCTGGC TCGTCAGCAC CATCGGGGAG GGCGTGCCGT TTCGCCGCGT GCTGGAGACG
ACTGTGCACT ACCACCTGCC CGGCGCCAGC GCGGAGGAAA AGCGCGCGTG GGTGGAGGAG
CGCCTGCAGC AGCAGTGCAC GCCGCGAGGC GGGGTGGAGC AGCTTTTGCC CAACGGCCAT
TACGTGCAGA TCACCGAGCG CGCCACGGCC GATGGCGGCG TGGTCATCAT CTACCACGAC
GTGACCGACC TGCGGCTGGC CACGGCCGAG GTGGAGCACC TGGCGTTCTA CGACCAGCTC
ACCGGCCTGC CCAACCGGCG CCTGCTGCTG GATCAGCTGG GCGACGCCAG CGCATCGGCG
GTGCGTACGG GCACGCATGG CGCGGTGCTG TTCATCGACC TGGACCACTT CAAGACCCTT
AACGACACCC TGGGCCACGA GATCGGGGAC TACCTGTTGC AGCAGGTGGC CCGCCGCCTG
GAAAGCGGCG TGCGCGTGGG CGACATCGTG GCGCGCCTGG GCGGGGACGA ATTCGTGGTG
CTGCTGGCCG GCCTGGCGAC CGAGGCGGAA CGCGCCCGCG AGCAGGTGCG CGCCGTGGCC
GAGAAGGTCG TGCAACTGCT GGCGCAGCCC TATCCGATCG CGGGGCAGAG CTACCACGGC
AGCTGCAGCG TGGGCGCCGC GCTGTTCGGC AGCGTGCTGC AGACCGCGGC CGAAGTACTC
AAGCAGGCGG ACATCGCCAT GTACCAGGTC AAGGCGCAGC GCGGCAACGC GGTGTGCTTC
TTCGACCCTC GCATGCAGGT GGCGCTGAGC GCGCGTGCGC GGCTGGAGTC GGACCTGCAG
GATGCGCTGC GCGAAGGGCA GTTCCTGCTG CACCTGCAGC CCCAGTTCAC GCGCGACGGC
GCCGTGGTGG GGGTCGAGGC GCTGCTGCGC TGGCAGCACC CGGAGCGCGG CCTGGTGCTG
CCTGCGGAGT TCATCGGCGT GGCGGAGGAC AGCGAGCTCA TCGTGCCCCT GGGCCGCTGG
GTGCTGGCCA GCGCCTGCGA GCTGCTGGCG CGCTGGCAGG CATCGCCGCG GCTGCGCGAG
CTGTCGCTGA GCGTGAATGT GAGCGCGCGC CAGTTCCGCA GCCCCGACTT CGTGGAGCAG
CTGTCGCAAC TCTTGCTGCG CAGCGGCGCA CCGGCGCACC GGCTGGAGTT GGAACTTACC
GAATCCCTGG TGCTGGAGGA CGTGGAAGAC TCCATCGCCA AAATGCACCA GCTGCGCACC
AAGGGTGTGC GTTTCGCCGT GGACGATTTC GGCACGGGCT ACTCTTCACT GGCCTACCTC
ACGCGGCTGC CATTGCATCG GCTGAAGATC GACCGCACTT TCGTGCACCA CCTGGGCGAG
AGTCGCAGCG ACGATGTGGT GGTGCAGACC ATCCTGGGCA TGGCGCGCAA CCTGGATCTG
GAAGTGGTGG CCGAGGGGGT AGAGACAGAG GAACAGCGCA GCTTTCTCGC GCTGCATGGC
TGCGACGTGT ACCAGGGCTA CCTGCTCGCG CACCCCATGC CGGTGGAGGC GCTGCAGGCC
CGCTACGGCG ACGCGCCGCA GGCGCAGCCC ACAGCAGCGC ACTGA
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| Protein sequence | MKPTPGRRLH LITWGVVAAL LAGLAVAVAV LLWHTRADAL DVAEARVTRF AAGAEAGMNR
TLLSFDVLLA HTEELLALRA RDRAGLDVVG ADTLLRGVAR QNLLLRYVAL LDARGAVLAS
SASTGELDGV ELPEGFLAAA LAPAVATLSV SQPVVSPTSS ERVLYMARQL RMGDGTPLLV
VAQVPTEALV AVLMQGLEVP DMELTLERTQ GVLLLGVEAP QGTVERQERA APALQEGGAD
DGVHAWQASA RLSGKPAMVV ARPLIYPDLW ATVSLPRDAA LAGWRQEAQT VLFGALLFAA
TVVAAGSVVA LYLRRMHSAR RVVARSKATL DQALEAMVSG FVLLDAQRCV VQWNLRFEEM
FPWLVSTIGE GVPFRRVLET TVHYHLPGAS AEEKRAWVEE RLQQQCTPRG GVEQLLPNGH
YVQITERATA DGGVVIIYHD VTDLRLATAE VEHLAFYDQL TGLPNRRLLL DQLGDASASA
VRTGTHGAVL FIDLDHFKTL NDTLGHEIGD YLLQQVARRL ESGVRVGDIV ARLGGDEFVV
LLAGLATEAE RAREQVRAVA EKVVQLLAQP YPIAGQSYHG SCSVGAALFG SVLQTAAEVL
KQADIAMYQV KAQRGNAVCF FDPRMQVALS ARARLESDLQ DALREGQFLL HLQPQFTRDG
AVVGVEALLR WQHPERGLVL PAEFIGVAED SELIVPLGRW VLASACELLA RWQASPRLRE
LSLSVNVSAR QFRSPDFVEQ LSQLLLRSGA PAHRLELELT ESLVLEDVED SIAKMHQLRT
KGVRFAVDDF GTGYSSLAYL TRLPLHRLKI DRTFVHHLGE SRSDDVVVQT ILGMARNLDL
EVVAEGVETE EQRSFLALHG CDVYQGYLLA HPMPVEALQA RYGDAPQAQP TAAH
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