| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dtpsy_2504 |
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| Symbol | |
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| ID | 7384775 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidovorax ebreus TPSY |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011992 |
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| Strand | + |
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| Start bp | 2664544 |
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| End bp | 2668047 |
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| Gene Length | 3504 bp |
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| Protein Length | 1167 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 643655813 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_002553940 |
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| Protein GI | 222111676 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.0917157 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAGCTGC CCAAACTCTC CCCCGAAAAA CGATTCACCC TGCCCCGCCC CGTGGGCAGC
GCCGACGCCT TGCTGCTGGC CCGCCTGGGC GAGCGGGAAA AGGCCGCAGG CCGCACCACC
GCCATCGTCA CCGCCGATGC AACCGACGCC CAGCGCCTCA TCGACGAGAT GGCCTTCTTC
GCGCCCGAGT TGCGCTGCGC GCTGTTTCCC GACTGGGAAA CGCTGCCCTA CGACAGCTTC
TCGCCGCACC AGGACCTGAT CAGCGAGCGG CTGGCCACGC TCTGGCGCAT CCAGCAGCGC
GACAGGGACA CGGGCGCCGA CGTGGTGCTG GTGCCGGCCA CCACGGCGCT GTACCGGCTG
GCGCCGCCCT CGTTCCTGGC GGGCTACACC TTCCATTTCA AGGTCAAGCA GAAGCTCGAC
GAGGCCAAGC TGCGCGCCCA GCTCACGCTC GCGGGCTACC AGCATGTGTC CCAGGTGGTG
GGCCATGGCG AATACGCGGT GCGCGGCGGG TTGATCGACC TGTTCCCGAT GGGCTCGGCC
GTGCCGTACC GGGTGGACCT GTTCGACGAC GAGATCGACT CCATCCGCAC GTTCGACCCC
GACAGCCAGC GCAGCCTCTA CCCGGTGCCC GAGGTGCGCC TGCTGCCCGG GCGCGAGTTC
CCCATGGACG ACGCGGCGCG CGCCAAGTTC CGCCAGCGCT GGCGCGAGCT GCTGGAGGGC
GATCCCACGA GGAGCCGCAT CTACAAGGAC ATGGGCAACG GCGTGGCCAC GGCCGGCATC
GAGTACTACC TGCCGCTGTT CTTCGACGAG ACGGCCACCG TGTTCGATTA CCTGGGCAAC
GAAGCCACCG TGGTGCTGCA CGGCGACCTG GAGACGGCCT TCCAGCGCTT CTGGCAGGAC
ACGCGCGACC GCTACCGCCT GATCCAGGGC GACCCGGACC ACCCCACTCT GCCGCCGGAG
GCGCTGTTCC TGGGCGCCGA GCAGTTCTAC GCCCAGGCCA ACCAGCATGC CCAGTTGTCG
CTGCGCCCCG GTGTGGAAGA CGTGGCGGAC AACGCGCAGT TCCAGAAGCT GCCCGACCTG
TCCGTGGTGC GCGGCGCCGA GGACCCGCTG GCGCGGCTGC AGGCGCACAT CCGCGCCACC
GGGCAGACCG GCCAGCGCGT GCTGCTGCTG GCCGAAAGCG ACGGCCGGCG CGAGAGCCTG
CTGGATTTCC TGCGGGCCTC GGGGTTGAAC CCGCCGGCTT TCGATTCGCT GGCCGAATTC
CAGGGGACGC CCGAAGAGCG CGTCGGCATC GCCACGGCGG CGCTGGCCTC GGGCTTCGCG
TGGATGGAAG AAGGGCTGGA CCTGGTCACC GAGACCGAGC TGTTCGCCGC CGGCTCCACC
ACGCGCCGGC GCAAGAAGCA GGAGCAGGCC AGCGACGTCG AAGCGCTGAT CAAGGACCTG
TCCGAGCTGA AGGTGGGCGA CCCCGTGGTG CACAACCAGC ACGGCATCGG GCGCTACCGC
GGCCTCATCC ACATGGATGT GGGCAACAAG AACCCCGACG GCAGCCCCGC GCTGCAGGAG
TTCCTGCACC TGGAATACGC CGACAAGGCC GTGCTCTACG TGCCCGTGAG TCAGCTACAG
CTTATCGGCC GCTACACGGG CGTGTCTGCC GACGAGGCCC CACTGCACAA GCTGGGCAGC
GGCCAGTGGG AAAAGGCCAA GCGCAAGGCC GCCGAGCAGG TGCGCGACGC CGCGGCCGAG
CTGCTCAACA TCTACGCCCG CCGCGCCGCG CGCGAGGGGC ATGCCTTCCG CTACTCGCCC
AACGACTACG AGCAGTTCGC CAACGACTTC GGCTTCGAGG AGACCGCGGA CCAGAAGGCC
GCGATCCACG CCGTGGTGCA GGACATGATC AGCCCGCGCC CCATGGACCG CCTGGTCTGC
GGCGACGTCG GCTTTGGCAA GACCGAGGTG GCGCTGCGCG CCTGCTTCGT GGCCGTGGCC
GGGGGCAAGC AGGTGGCGTT CCTGGCGCCC ACCACGCTGC TGGCCGAGCA GCACTACCGC
ACGCTGAGCG ACCGCTTCAG CAAGTGGCCC GTGAAGGTGG CCGAGGTCTC GCGCTTTCGC
TCGGGCAAGG AGATCACCGC CGCCGTCAAG GGCATTGCCG ACGGCACGGT GGACATCGTC
GTGGGCACGC ACAAGCTGCT CAGCGAATCG ACCCAGTTCA AGAACCTGGG CCTGCTCATC
ATCGACGAGG AACACCGCTT CGGCGTGCGC CACAAGGAGG CGATGAAGCA GTTCCGCGCC
GAGGTGGATG TGCTCACGCT CACCGCCACG CCGATCCCGC GCACCATGGG CATGGCGCTG
GAGGGGCTGC GCGACCTGTC CGTGATCGCC ACCGCGCCGC AGCGGCGCCT GGCCATCAAG
ACCTTCGTGC GCAACGAAGG CACGGGCGTG ATCCGCGAGG CCGTGCTGCG CGAGCTCAAA
CGCGGCGGCC AGTGCTACTT CCTGCACAAC GAGGTCGAGA CCATCGAGAA CCGGCGCCAG
AAGCTCGAAG AGATATTGCC CGAGGCGCGC ATCGCCGTGG CCCACGGCCA GATGCCCGAG
CGCGAGCTGG AGCGCGTGAT GCGCGACTTC GTGGCCCAGC GCTACAACAT CCTGCTGTGC
TCGACCATCA TCGAGACCGG CATCGACGTG CCCACGGCCA ACACCATCAT CATCAGCCGC
GCCGACAAGT TCGGCCTGGC GCAGCTGCAC CAGTTGCGCG GGCGCGTGGG GCGCAGCCAC
CACCAGGCCT ACGCCTACCT GATGGTGCCC GACATCGACG GCCTGACCAA GCAGGCGCAG
CAGCGCCTGG ACGCCATCCA GCAGATGGAG GAGCTGGGCA GCGGCTTCTA CCTGGCCATG
CACGACCTGG AGATCCGCGG CGCGGGCGAG GTGCTGGGCG AGAGCCAGAG CGGCAACATG
ATGGAGATCG GCTTCCAGCT CTACAACGAG ATGCTGGCCG AGGCGGTGAA GCAACTCAAG
GCTGGGAAGG AGCCCGATCT GCTCGCCCCC ATGCAGGCCG CCACCGACAT CAATCTGCAC
GCCCCGGCCC TGCTGCCCGA CGACTATTGC GGCGACGTGC ACCTGCGCCT GTCGTTCTAC
AAGAAGCTGG CCACGGCCAA GACCGGCGAC CAGATCGATG GCCTGCTCGA AGAGATCGTG
GACCGCTTCG GCAAGCTGCC GCCGCAGGCG CAGACGCTGA TCGACGTGCA CCGCCTGCGC
GTGCTGTCCG CGCCCTACGG CGTGGTGAAG GTGGATGCCG CCCCCGGCGT GATCACCATC
ACCTTCAAGC CGCAGCCGCC GGTGGACCCC ATGGCCATCA TCCACCTGAT CCAGAAGAAC
AAGCACATCA AGCTGGCGGG CAACGAGAAG CTGCGCATCG AGCGCGAGCT GCCCGACCCC
GCCGCGCGCG CCCAGATGGT GCGCGACGTA CTGCGCAGCC TGGGCCAGCC GCTGGCCGAG
GTGCAGGCCG CCGTCCCCGC TTAG
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| Protein sequence | MQLPKLSPEK RFTLPRPVGS ADALLLARLG EREKAAGRTT AIVTADATDA QRLIDEMAFF
APELRCALFP DWETLPYDSF SPHQDLISER LATLWRIQQR DRDTGADVVL VPATTALYRL
APPSFLAGYT FHFKVKQKLD EAKLRAQLTL AGYQHVSQVV GHGEYAVRGG LIDLFPMGSA
VPYRVDLFDD EIDSIRTFDP DSQRSLYPVP EVRLLPGREF PMDDAARAKF RQRWRELLEG
DPTRSRIYKD MGNGVATAGI EYYLPLFFDE TATVFDYLGN EATVVLHGDL ETAFQRFWQD
TRDRYRLIQG DPDHPTLPPE ALFLGAEQFY AQANQHAQLS LRPGVEDVAD NAQFQKLPDL
SVVRGAEDPL ARLQAHIRAT GQTGQRVLLL AESDGRRESL LDFLRASGLN PPAFDSLAEF
QGTPEERVGI ATAALASGFA WMEEGLDLVT ETELFAAGST TRRRKKQEQA SDVEALIKDL
SELKVGDPVV HNQHGIGRYR GLIHMDVGNK NPDGSPALQE FLHLEYADKA VLYVPVSQLQ
LIGRYTGVSA DEAPLHKLGS GQWEKAKRKA AEQVRDAAAE LLNIYARRAA REGHAFRYSP
NDYEQFANDF GFEETADQKA AIHAVVQDMI SPRPMDRLVC GDVGFGKTEV ALRACFVAVA
GGKQVAFLAP TTLLAEQHYR TLSDRFSKWP VKVAEVSRFR SGKEITAAVK GIADGTVDIV
VGTHKLLSES TQFKNLGLLI IDEEHRFGVR HKEAMKQFRA EVDVLTLTAT PIPRTMGMAL
EGLRDLSVIA TAPQRRLAIK TFVRNEGTGV IREAVLRELK RGGQCYFLHN EVETIENRRQ
KLEEILPEAR IAVAHGQMPE RELERVMRDF VAQRYNILLC STIIETGIDV PTANTIIISR
ADKFGLAQLH QLRGRVGRSH HQAYAYLMVP DIDGLTKQAQ QRLDAIQQME ELGSGFYLAM
HDLEIRGAGE VLGESQSGNM MEIGFQLYNE MLAEAVKQLK AGKEPDLLAP MQAATDINLH
APALLPDDYC GDVHLRLSFY KKLATAKTGD QIDGLLEEIV DRFGKLPPQA QTLIDVHRLR
VLSAPYGVVK VDAAPGVITI TFKPQPPVDP MAIIHLIQKN KHIKLAGNEK LRIERELPDP
AARAQMVRDV LRSLGQPLAE VQAAVPA
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