| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dtpsy_2364 |
|---|
| Symbol | |
|---|
| ID | 7383224 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax ebreus TPSY |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011992 |
|---|
| Strand | - |
|---|
| Start bp | 2513796 |
|---|
| End bp | 2515883 |
|---|
| Gene Length | 2088 bp |
|---|
| Protein Length | 695 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 643655672 |
|---|
| Product | Calcium-binding EF-hand-containing protein |
|---|
| Protein accession | YP_002553801 |
|---|
| Protein GI | 222111537 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4147] Predicted symporter |
|---|
| TIGRFAM ID | [TIGR03648] probable sodium:solute symporter, VC_2705 subfamily |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.267814 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATTGAAC GCGGCGGCGA GGGGCGCAGC TACATGGCGC GCCTGAACCG CATCGTGGCG
CTGTACATCG CAGGGCTGCT GGGGTTCGTG GCCCTGATGG CCTGGGCCGA GCAGCGCGGG
CTGTCGCGCC AGTGGATTGG CCCCATCTTC CTGTTTCTCA CCGTGATGGC CTACGCCGCC
ATCGGCGTGT ACGGCCGCAC CACGGATGCG GACGAATACT ACGTGGCGGG CCGCCGCATT
CCGCCGTTCT ACAACGGCAT GGCCGCCGCC GCGGACTGGA TGAGTGCGGC CTCGTTCATC
AGCCTGTCGG GCGCGCTGTA TCTGCAGGGC TTCTCGGGCA CGCCGGAGCA GCCGGGCGGG
CTGGCCTATC TGTTGGGCTG GACGGGCGGC TTCGTGCTCG TGGCCATGCT CATCGCGCCG
CACCTGCGGG CGATGAACCT CTACACCGTT CCGGACTTCT TCCAGGTGCG TTTTGGCGGG
CGCTGGCCAC GCATCATCGC GGCCCTGTCG GCCGTGCTGT GCTCTTTCAC CTACGTGGTG
GCGCAGATCT ACGGCGTGGG GCTGATCGCC TCGCGCCTGA CCGGGGTGCA GTTCGAGATC
GGCATCATGC TCGGCCTGGG CGGCGTGCTG CTGTGCTCGT TCCTGGGGGG GATGCGCGCC
ATCACCTGGA CGCAGGTGGC GCAGTACATC GTCATCCTGC TGGCGTTCCT GATCCCCGTG
TCGTGGCTGG CGTACAAGCA GCTCGGCAAC CCCGTTGCAC CGGTGGTGGC GGGGGCACAG
ATCGGCAAGA TCACCACGCT GGAGGGCGGG CTGCTGGCCT CGGAGGTCGA GCAAGACGTG
GTCGCGGCCT ACCTGCAGCG CGCCGAGGAT TACAAGACGC GACTGGCCGA CGTGCCCGCC
GCACTCGCGC GTGAGCGCGA AGCGGCGCGC GAGCGCATCC AGCGCCTGCG CGCCCAGAAC
GCCGACGTGG GGCTGATCGT GGCCGCCAGC CGGGATTTGG CCTCCATGCC GCGCGACGAG
GCTGCCGCGC GCGATCGCTG GACGCGCGAG ATGCGCGACA ACTATGAGCG CGCCCGCGCC
ATGGGCGGCT TGCCGCGCCA CAGCCAGGCG TTTGCGGGCG ATCCGCAGGG CACCCCGCAG
GAGCGCCAGA CCTTCGACGA TGCGCGCCGC AACTTCCTGG CGCTGATGTT CTGCCTGATG
GTGGGAACGG CCGGCCTGCC GCACCTGCTG ACGCGCTACT ACACGGTGCC CTCGGTGGCG
GGTGCGCGCG CGTCGGTCGC GTGGTCGCTG TTCTTCATCG CACTGCTGTA CCTGAGTGCG
CCGGCGCTCG CCGTGCTGGT GAAGTTCGAG GTCATGAACA ACCTCGTGGG CAGCAGCTTC
GACCAACTGC CCAACTGGAT GGCGCAATGG GCGCGTGTGG ACGCGTCGCT GCTGTCCGTG
GAGGACGTGA ACGGCGACGG CATCGTGCAG TTCGGCGAAA TCCGCTTCGG AGCCGACCTC
ATCATGCTGG CCACGCCCGA GATCGGCGGG CTCCCCTACG TGATCTCCGG CCTGGTGGCC
GCGGGCGGGC TGGCCGCTGC GCTGTCCACT GCCGACGGCC TGCTGCTCAC CATCAGCAAC
GCGCTGGTGC GCGACCTGTA CCACCAGGAA ACGCGCCGCA AGGCGTCGCC CGAGCAGCGG
GTGATCCTGA CCAAGTTCAC GCTGCTCTCC GTGGCGCTGT CCGCGGCGTT CGTGGCGGCG
CTCAAGCCGT CCGAAATCCT GCCCATGGTG TCGGCGTCGT TTTCCATCGC CGCATCGGCC
TTCGTGCCCG CGATGGTGAT GGGCATCTTC TGGCGCGGTA CTACGCGCCA GGGCGCGGTA
GCCGGCATGC TCGCCGGCCT GTCTGTCACG GTGTATTACC TGTTGGCGCA GGTGGACAGC
GTGCGCGATT GGGTGCCTTC CGCGCTGCTC GTCGATGGCC TGTGGTTCGG CATCCATCCG
ATTTCGGCCG GGGTCTTCGG CGTGCCGGTG GGTCTGGCTG TGGCGTGGAG CGTCAGCCTG
GCCACGCGGC CGGGCCGCGT GCGGCCGGCT CCCGCGGACG GGCTGTAG
|
|---|
| Protein sequence | MIERGGEGRS YMARLNRIVA LYIAGLLGFV ALMAWAEQRG LSRQWIGPIF LFLTVMAYAA
IGVYGRTTDA DEYYVAGRRI PPFYNGMAAA ADWMSAASFI SLSGALYLQG FSGTPEQPGG
LAYLLGWTGG FVLVAMLIAP HLRAMNLYTV PDFFQVRFGG RWPRIIAALS AVLCSFTYVV
AQIYGVGLIA SRLTGVQFEI GIMLGLGGVL LCSFLGGMRA ITWTQVAQYI VILLAFLIPV
SWLAYKQLGN PVAPVVAGAQ IGKITTLEGG LLASEVEQDV VAAYLQRAED YKTRLADVPA
ALAREREAAR ERIQRLRAQN ADVGLIVAAS RDLASMPRDE AAARDRWTRE MRDNYERARA
MGGLPRHSQA FAGDPQGTPQ ERQTFDDARR NFLALMFCLM VGTAGLPHLL TRYYTVPSVA
GARASVAWSL FFIALLYLSA PALAVLVKFE VMNNLVGSSF DQLPNWMAQW ARVDASLLSV
EDVNGDGIVQ FGEIRFGADL IMLATPEIGG LPYVISGLVA AGGLAAALST ADGLLLTISN
ALVRDLYHQE TRRKASPEQR VILTKFTLLS VALSAAFVAA LKPSEILPMV SASFSIAASA
FVPAMVMGIF WRGTTRQGAV AGMLAGLSVT VYYLLAQVDS VRDWVPSALL VDGLWFGIHP
ISAGVFGVPV GLAVAWSVSL ATRPGRVRPA PADGL
|
|---|
| |