| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dtpsy_2264 |
|---|
| Symbol | |
|---|
| ID | 7384857 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax ebreus TPSY |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011992 |
|---|
| Strand | - |
|---|
| Start bp | 2406750 |
|---|
| End bp | 2408081 |
|---|
| Gene Length | 1332 bp |
|---|
| Protein Length | 443 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 643655573 |
|---|
| Product | General substrate transporter |
|---|
| Protein accession | YP_002553702 |
|---|
| Protein GI | 222111438 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.176336 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTAGCG GTTCCGTCGC ATACCCCGTT TACGGCCCCG AGAGCGCGGC ATCGCTGTCG
CGCGCGCACA CTGACGAAGA CGTCACCCCG GGCGAGATCG CCGTGGGCGT GATCATCGGG
CGCGCGTCGG AGTATTTCGA CTTCTTCGTA TTCGGGATCG CCTGCGTGCT GGTCTTCCCG
TCGCTGTTGT TTCCCTTCAT GACGCGGCTG GACGGCACGC TCATGGCTTT TGCCATCTTT
GCCATCGCCT TCATCGCCCG GCCGCTGGGC ACCGCCATCT CCATGGCCGT GCAGCGGCGC
TGGGGGCGCG GCACCAAGCT GACGCTGGCG CTGTTCCTGC TGGGCGGCTG TACGGTAAGC
ATGGCCTTCC TGCCCAGCTA CCAGGTGGCG GGGCTGGCAG CCGCTGGGGC GCTGGCGGTG
CTGCGCTTCG GCCAGGGGCT GGCGCTGGGC GGCTCCTGGG ACGGGCTACC GTCGCTGCTG
GCGATGGCGG CACCGCCGGA GCGCCGCGGC TGGTATTCCA TGGTGGGGCA ACTGGGCGCG
CCCGTAGGGT TTGCATTGGC CGCCGGGTTG TTCGCCTACC TGTACGGCAG CCTCTCCAGC
GAAGAATTCC TGGCCTGGGG CTGGCGCTAC CCGTTCTGCG TGGCCTTTGC GATCAACGTG
GTGGCGCTGT TTGCGCGGCT GCGCCTGGTG GTGGGGCAGT CCTATGCCGA ATTGCTGCAA
GAGAAGGAAC TGGAGCCCGT GGGCGTGGCC CGCGTGATGC GCGAAGAGGG GAGCAATGTG
GTGCTGGGCG CCTTTGCGGC ACTGGCCAGC TTCGCACTCT TTCACGTGGT GACGGTGTTC
CCGCTGTCGT GGTTCGCCCT GTTCTCCGAC CGCTCCATGG CCGAGGTGCT GTGCGTGCAG
ATCGCCGGCG CATTCCTGGC CATCGGCGCG GTGGTGGTGT CGGGGCGGTT GGCCGACCGC
ATGGGCCGGC GCAACCTGCT GGGCTCCATG GCCGTGCTGA TTGGCCTGTT CAGCCTGGCC
ACACCCTGGC TGCTGGGCGG TGGCGCGGTG GGCGGCACGG TGTTCCTGCT GCTGGGCTTC
GTGCTGCTGG GCCTGTCGTA CGGCCAGGCA TCGGGCACGG TGACGGCCAA CTTCTCCACC
CTGCACCGCT ACACCGGGGC GGCACTGTCG TCCGACCTGG CCTGGCTGAT CGGCGCGGCC
TTCGCGCCGT TGGTGGCTCT GGGGTTGTCG GCACGTTTCG GGCTGGGGGC GGTGACGCTG
TATCTGCTGT CGGGCGTGGT CTGCACACTC GGCGCGTTGC GTATCAATCG CCTCATCGAG
CAGCGCAGCT GA
|
|---|
| Protein sequence | MSSGSVAYPV YGPESAASLS RAHTDEDVTP GEIAVGVIIG RASEYFDFFV FGIACVLVFP
SLLFPFMTRL DGTLMAFAIF AIAFIARPLG TAISMAVQRR WGRGTKLTLA LFLLGGCTVS
MAFLPSYQVA GLAAAGALAV LRFGQGLALG GSWDGLPSLL AMAAPPERRG WYSMVGQLGA
PVGFALAAGL FAYLYGSLSS EEFLAWGWRY PFCVAFAINV VALFARLRLV VGQSYAELLQ
EKELEPVGVA RVMREEGSNV VLGAFAALAS FALFHVVTVF PLSWFALFSD RSMAEVLCVQ
IAGAFLAIGA VVVSGRLADR MGRRNLLGSM AVLIGLFSLA TPWLLGGGAV GGTVFLLLGF
VLLGLSYGQA SGTVTANFST LHRYTGAALS SDLAWLIGAA FAPLVALGLS ARFGLGAVTL
YLLSGVVCTL GALRINRLIE QRS
|
|---|
| |