| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dtpsy_2042 |
|---|
| Symbol | |
|---|
| ID | 7385035 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax ebreus TPSY |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011992 |
|---|
| Strand | - |
|---|
| Start bp | 2183042 |
|---|
| End bp | 2186749 |
|---|
| Gene Length | 3708 bp |
|---|
| Protein Length | 1235 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 643655361 |
|---|
| Product | protein of unknown function DUF748 |
|---|
| Protein accession | YP_002553498 |
|---|
| Protein GI | 222111234 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG2982] Uncharacterized protein involved in outer membrane biogenesis |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGCTGCAAG TCATCAAGAA CAACCCCTGG ATTCGTCGAT TTGCATGGTT GGTGCTGTGC
TGGGGCGGCG CGTGGCTGCT CGGTTGGCTG GTGGTCCCTC CGCTGGCGCA GTCGCAGATT
GAAAGGCATG CGAGTGAAGC GCTGGGGCGC AAGCTGACGG TCGAACGGGT GGAGTTTTTG
CCCTGGACTT TGGAGGCCAC TTTGCACGGC GTAGCCCTGG CGTCAAAGGA TGGCAGTTCA
GAGCAGGTAC GGGTGGGCCG CATCTATATA GACGCTGAAT TGCAATCCCT TTGGCGGGGC
GCTCCAGTGA TCGATGCGCT GCAGGTAGAC GACCCGGTAG TTCGTGTCAC GCAATTGGCC
CCAGGGGTTT ATGACGTGGA CGACTTGCTC GCGCTCATGG CGGCGAAGCC GCAGGGCGAG
AAATCAGCCA CGGAGCCGGC ACATTTCGCG CTCTTCAATA TCGCATTGAA GGGTGGTGTC
GTCGAATTCG ATGACCGTAC GGTGGAGGTG GTGCACACGT TGCGCCGCGT GGAACTGGAC
GTTCCTTTCC TGAGCAGTTT TTCTGCGGAC CGCGAGGTCA AGGTGACGCC GCGCCTGGCG
TTTGAGCTCA ACGGCAGCAC CTTTGATACC TCAGCGATGG CCACTCCCTT CATGGACGCC
AGGCAAGCCG AGGTTCGCCT GCATATTGAG AATTTCGACC TGGCCCCCTT CGGTCGCTAC
CTGCCGCCCA GCGTGCCGGT GCGGCTCAAG GCGGGGCGAT TGGACGCGGA TGTTCAACTA
GGGTTCGAGC AACGGGAGAC CCCTCGACTG CTGATTTCCG GGGATGTGCA ACTGAGCGGG
GTACATGCCA CCGATGCGCA GGAGCAGCCT TTGCTGCAAT TCGAGGAAAT GCGTGCCGTA
TTCAAGGAGA CGGAGCCCCT GCGGCGCAGG ATCAACATTG ATCTGCTGGA ATGGCGCGGC
GCGCGTGCAC ATGTACGCCG AAACGAGGCG GGTGAAGTAA AGCTTGCGGG ATTGCCACGG
GCCGACAGCG ACGAGCACCC AGCGCCACAG ACAAAGGAGT CTGCGGAGCC CTGGCGTGTC
CATATCGCCA GGGTGGGTTT GCGGGATGGC TTCATCCAAT GGACCGATGC CAGCCTGCCG
CGGGGGACCG CCGCGTGGGA GGTGGAAGAC TTGCAGGTAG AAGCGTCGTC CATTGCCTTG
CCGCTGGAAC AGCCCATGCA ACTGCGTGCG AGTGCTTCCC TCAGGCAGTC TGCGGCCGCC
GGCAGCAGCG AATCCGCGCG ATTGGCTGTA CTGGGCCAGG TGAGCGCCTC GCAGGCGCAG
GCCGCCCTTT CCATCAAGGG CCTGCCGCTG TCCATCGCTG CGCCCTATCT GGCGGGCGTG
CTGCAACCCC GCGTGGAAGG TTCCGTGGAT GCGGACCTGG GAATAGCACG GCATGGCGAT
GTCGTGCTGG CGAAGGTGGC TGCGTTGTCC GTGGATAAGT TGGCGCTGCG TTGCGCCTCC
AAGGAACAAT GCGTTCCACT GCAGAGCGCA GGAATCAAGG ACGCGCCTGC GGATTCACTG
GCCGCGTGGA GCCGGCTGGA AGCGGGCAAT GCCTGGATAC GCTGGCCCCA GCGCGCCGTA
TTGGTAGAGC AGATTTCGTT GCAGAGGCCG CGCCTGCTGC TGTCGCGCAC TCGCACGGGG
GAATGGATGT TTGAACAGTG GGGCGTGTCG CCCCCGGGGG TGACGGGGCC CAACGCGGAC
GCTCCAAAGG CTGCGGGTCT TCCCTGGTCC ATGGGGCTGG CTTCCCTGAA GATCGATGGC
GCAGCAGTGG CTTTGCGCGA CGCGGTAGCG CAGAGCGCCG TAGCGCTGAA TGTGTTCGAC
CTGCAACTGC ACGCGCGGGA TTTTGCTTAT GCGGACGGGC GGGTCACTCC CACGTCATTG
CGCCTGGAAG GCCGGGTGGG TGCAGGGAGG ACCGAACCAG GCCGGTTGCG CTACGAGGGC
TCGGTGGCGA TGGCGCCCGT TCTGACGGCG CAGGGCAAGG TACGCGCCCA ACACCTGCCG
TTGCACGCGC TGGAGCCCTA TGTAGGGCAG CAGCTTAATG TCGACGTCCT CCGCGCCGAT
GGTGGCTTCG ACGGAGACGT GCGCTATGTC CAAGGGAATG CCGGCGCCAC TGTTTCGGTC
AAGGGGGATG TGTCGCTGGA CGAGGTGCGC GTGCGCGCCA AGGCTGGCTT GGACATGCCC
GAGGAGACGA AGGCCGGCGA GCGGAGCGTA GGTGCGCGGG GCGAGGATCT GCTGCGCTGG
AGATCCCTGG CGTTGCGCGG GGTGGCGATG AATTTGCAGC CAGACCAGCC TGTGTCTCTG
GATGTGAAGG AAACGGCACT CAGCGATTTC TTCGCACGGA TCATCGTGCA GGAAGACGGC
CGCATCAATT TGCAGGATAT TCGCAAGGCT TCGGCAGCGG AAGACGCGGT TGCGGCATCG
AACGCTGCAG CCGCCGCTCC GGCAGCGGCC CCTTCGGGTC CGCAGATCCG CTTTGGTCCC
GTGGCGCTGA CCAATGGGTC GGTGCGCTTC ACGGATTACT TCATCAAACC CAACTACTCT
GCCGACCTGA GTGCACTCAC GGGCCGGTTG AGCGCATTTT CCTCGGTGTC GCCGGAGGCG
GGGGCAGCGC CGCAGATGGC CGACCTGGAA TTGCGCGGTC GCGCCCAGGG GACGGCGTCA
CTGGAAGTCA CCGGCCGCAT CAACCCGCTG GTCAAGCCCC TGGCGCTGGA TATTCAGGGG
CGCATGCGTG ACCTTGAGCT GCCCCCGTTG TCGCCTTACA GCATCAAGTA CGCGGGTCAT
GGGATCGAGA AGGGCAAGCT CAGCATGGAC GTGGCGTACA AGATCTTGCC CGATGGGCAG
CTCATCGCTA CCAACAAGCT GGTATTGAAC CAACTGGCGT TTGGGGAACC CGTGGAGGGC
GCGTCCGCCA GTCTGCCCGT GCGGCTGGCG ACGGCCCTGC TGGCGGACCG CAATGGGATC
ATCGACGTGG ATCTGCCCAT CAGCGGCTCC CTCAACGACC CCGAATTCCG TCTGGGAGCG
GTCATCCTGA AGGTCATCGG CAACCTCATC ATGAAAGCGA TCACCGCCCC CTTTTCCCTG
TTGGCTGGCG CTTTCAGCGA CGCGGGCGAG CAGGGTGCGG TTCTCTTCGC GCTGGGCAGT
CCAGAACTGG ATGAGAAGGC CCGACAGCAA CTGGACAAAA TCGCCAACGA ACTGAACAAC
CGCCCCGCAC TGAAGGTCAC GGTCGTGGGT TGGGCACAGC CCAACGCCGA GCAGCTGGCA
TGGAAACGCC AGCGCTTGCG AGACATGGCC GAGGCGCAAA AGCGCAGGGC AGCCATCCGT
GCGGGTGAAC CTGCGGACAG CATCGCACCG CTCACTGACG AGGAATACCC CGCGCTGCTG
AAGGAGTTGT ATCGCCGGTC CGACATCCGC AAACCGCGCA ACTTCGTCGG CTTGGCGAAG
GACGTACCCG TTGCAGAGAT GGAGGCCCTG CTGATGCACA ACCTGACAAT TCCGGACAAC
GCCATGGCGG ATCTAGCCCT GGCGCGAGGG GTGGCCGTGC GGGACTACCT GGCGCAACAG
CAAGTCCCGC TTGAACGTTT GTTCGTAGGC GCAAGCAAGC TGCAGCCGGG CGGGGAGGGC
GATGCGCGAT GGCAGCCGAA GGCAGAGCTT TCTTTGAATG CCCAGTGA
|
|---|
| Protein sequence | MLQVIKNNPW IRRFAWLVLC WGGAWLLGWL VVPPLAQSQI ERHASEALGR KLTVERVEFL
PWTLEATLHG VALASKDGSS EQVRVGRIYI DAELQSLWRG APVIDALQVD DPVVRVTQLA
PGVYDVDDLL ALMAAKPQGE KSATEPAHFA LFNIALKGGV VEFDDRTVEV VHTLRRVELD
VPFLSSFSAD REVKVTPRLA FELNGSTFDT SAMATPFMDA RQAEVRLHIE NFDLAPFGRY
LPPSVPVRLK AGRLDADVQL GFEQRETPRL LISGDVQLSG VHATDAQEQP LLQFEEMRAV
FKETEPLRRR INIDLLEWRG ARAHVRRNEA GEVKLAGLPR ADSDEHPAPQ TKESAEPWRV
HIARVGLRDG FIQWTDASLP RGTAAWEVED LQVEASSIAL PLEQPMQLRA SASLRQSAAA
GSSESARLAV LGQVSASQAQ AALSIKGLPL SIAAPYLAGV LQPRVEGSVD ADLGIARHGD
VVLAKVAALS VDKLALRCAS KEQCVPLQSA GIKDAPADSL AAWSRLEAGN AWIRWPQRAV
LVEQISLQRP RLLLSRTRTG EWMFEQWGVS PPGVTGPNAD APKAAGLPWS MGLASLKIDG
AAVALRDAVA QSAVALNVFD LQLHARDFAY ADGRVTPTSL RLEGRVGAGR TEPGRLRYEG
SVAMAPVLTA QGKVRAQHLP LHALEPYVGQ QLNVDVLRAD GGFDGDVRYV QGNAGATVSV
KGDVSLDEVR VRAKAGLDMP EETKAGERSV GARGEDLLRW RSLALRGVAM NLQPDQPVSL
DVKETALSDF FARIIVQEDG RINLQDIRKA SAAEDAVAAS NAAAAAPAAA PSGPQIRFGP
VALTNGSVRF TDYFIKPNYS ADLSALTGRL SAFSSVSPEA GAAPQMADLE LRGRAQGTAS
LEVTGRINPL VKPLALDIQG RMRDLELPPL SPYSIKYAGH GIEKGKLSMD VAYKILPDGQ
LIATNKLVLN QLAFGEPVEG ASASLPVRLA TALLADRNGI IDVDLPISGS LNDPEFRLGA
VILKVIGNLI MKAITAPFSL LAGAFSDAGE QGAVLFALGS PELDEKARQQ LDKIANELNN
RPALKVTVVG WAQPNAEQLA WKRQRLRDMA EAQKRRAAIR AGEPADSIAP LTDEEYPALL
KELYRRSDIR KPRNFVGLAK DVPVAEMEAL LMHNLTIPDN AMADLALARG VAVRDYLAQQ
QVPLERLFVG ASKLQPGGEG DARWQPKAEL SLNAQ
|
|---|
| |