| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dtpsy_1918 |
|---|
| Symbol | |
|---|
| ID | 7382279 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax ebreus TPSY |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011992 |
|---|
| Strand | - |
|---|
| Start bp | 2051761 |
|---|
| End bp | 2053635 |
|---|
| Gene Length | 1875 bp |
|---|
| Protein Length | 624 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 643655235 |
|---|
| Product | extracellular solute-binding protein family 5 |
|---|
| Protein accession | YP_002553375 |
|---|
| Protein GI | 222111111 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG4166] ABC-type oligopeptide transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.141115 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGGTTCT GGCGTATCTG TTTATTGATC GGTTGGCTGG GAGGGAGCAG CGTGGCGGGC
GGGGCGGCCT GGGCCGCGCA TGCCTACGCG ATGTGGGGGG CGCCCGCGCT GGCGGCCGAC
TTCGCGCACT TCCCCTACGT CAACCCACAG GCGCCCAAGG GCGGCGAACT GCGCCTGGTG
AGCAATCTGC GCACCTCCAC CTTCGACAAG TACAACCCAT TCACGATCCG CGGCAACGCG
CCGGCCTACC TGTCGGCGCT GATGTTCGAC TCGCTGCTCA CCGGCTCGCT GGACGAAACG
GCCACCGGCT ACGGACTGCT GGCCGAGGAT GTGGCGGTGG CGCCGGACGG CCTGTCGGCC
ACCTTCAGGC TGCGGCCCGA GGCGCGCTTT CACAACGGCA AGCCGGTGCT GGCCCAGGAT
GTAAAGCACA GTTTCGACAC CTTGATGGGC CCTTACACCT CACCGGGCTA CAAAACGCTG
CTGATCGAGG TGGCCGGTGT GGATGTGCTG GACGACCGCA CCGTGCGCTA CCGCTTCAAG
GCGCCCAACC GCGAACTGCC GCTCACCGTC GGGGGGCTAC CCGTGTTCAG CCGCGACTGG
GGACTGGGCG CCGACGGCAA GCCCAAGCCG TTCGACCAGG TGGTGATGGA CATCCCCATC
GGCAGCGGAC CGTACAAGAT TGGGCCTGTC AACTTCGGCA AGGACATCAC CTATGTGCGC
GACCCCCAGT ATTGGGCGCG CGACCTGCCC GTGCGCAAGG GGACGGCCAA CTTTGACCGT
GTGCTGGTCA AGATCTACAA GGACAACACT GCGCGGCTGG AGGCGCTGAA GGCCGGCGAG
TTCGATTTGA TGCGGTTTTT CAGTGCGGGC GACTGGGCGC GGCGGGTCAA CGGCCGCAAG
TTCGACACGG GTGAGCTGGT CAAGGGCGAG TTCGCCAACA AACTGCCCTC GGGCTTCCAG
AGCTATGTGC TGAACACCCG CCGCCCGCTA CTGCAGGACC GCCGCGTGCG AGAGGCCCTG
GGGCTGGCGT TCGACTTTGA GTGGATGAGC CGCCAGCTTT TCTATGGTGC CTATCAGCGC
GTGCGCGGCA TTTTCGGCAA CACCATGTGC GAGACCCACG GCATGCCCAC GCCGCAGGAG
CTGGCGTTGC TGGAGCCCTG GCGCAAGGAT CTGCCCCCCG CGGTCTTCGG CCCCATGTTC
GAGCCGCCCA CCACCGACGG CGCCACCACG CTGCGCGACA ACCTGCGTCG CGCGCAGGCG
CTGCTCCAGG AGGCAGGCTG GCAGGTGCAG GATGGCGTGC TGCGCAACGC CAGCGGCCAG
GCCATGGTGC TGGAATACAT GGACAGCAGC GAAGGCGGCG TGCGCACGTT GTCCTCGTGG
ATGCGCAACC TGCAAAAGCT CGGCATCACC CTCAAGTTCC GCTCGGTGGA CTTCGCGCTG
TACCAGCAGC GCCTGCAGAA GTTCGACTTC GACATCACCA CCATTGCCTA CCAGGGCACC
AACAACCCGG GGCAGGAGTT TGCCGACCTG TTCGGCAGCG CGGCGGCAGA CCAGGAAGAC
TCGGGCAATT TCCCCGGCGT AAAGAGCCCG GCCGTGGACG CAATGATCCG TGCCATGGTC
TCCGCCAAGA CGCAGGAACA GATGTTGCCT GCGTGCCATG CGCTGGACCG CATCATTGCG
CACGGCCACT ACCTCATCCC GCAGTGGTCC GCGGGCACCC ATCGCATGGT CTACAACGCC
TGGCGCCTGG ACCGGCCCGA AGTGGTGCCG CCGTATTCGA CCGGAGAGAT GTGGGCGGTG
GATACCTGGT GGGCCCGTTC GCCTGCGCTG ACCGCCGAGA CTGCGCCCAA GGCCGCGACG
CCGCGCAAGG ACTGA
|
|---|
| Protein sequence | MRFWRICLLI GWLGGSSVAG GAAWAAHAYA MWGAPALAAD FAHFPYVNPQ APKGGELRLV
SNLRTSTFDK YNPFTIRGNA PAYLSALMFD SLLTGSLDET ATGYGLLAED VAVAPDGLSA
TFRLRPEARF HNGKPVLAQD VKHSFDTLMG PYTSPGYKTL LIEVAGVDVL DDRTVRYRFK
APNRELPLTV GGLPVFSRDW GLGADGKPKP FDQVVMDIPI GSGPYKIGPV NFGKDITYVR
DPQYWARDLP VRKGTANFDR VLVKIYKDNT ARLEALKAGE FDLMRFFSAG DWARRVNGRK
FDTGELVKGE FANKLPSGFQ SYVLNTRRPL LQDRRVREAL GLAFDFEWMS RQLFYGAYQR
VRGIFGNTMC ETHGMPTPQE LALLEPWRKD LPPAVFGPMF EPPTTDGATT LRDNLRRAQA
LLQEAGWQVQ DGVLRNASGQ AMVLEYMDSS EGGVRTLSSW MRNLQKLGIT LKFRSVDFAL
YQQRLQKFDF DITTIAYQGT NNPGQEFADL FGSAAADQED SGNFPGVKSP AVDAMIRAMV
SAKTQEQMLP ACHALDRIIA HGHYLIPQWS AGTHRMVYNA WRLDRPEVVP PYSTGEMWAV
DTWWARSPAL TAETAPKAAT PRKD
|
|---|
| |