| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dtpsy_1884 |
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| Symbol | |
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| ID | 7382245 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidovorax ebreus TPSY |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011992 |
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| Strand | - |
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| Start bp | 2004666 |
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| End bp | 2007368 |
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| Gene Length | 2703 bp |
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| Protein Length | 900 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 643655201 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_002553341 |
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| Protein GI | 222111077 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.996671 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATAAAG AGGTGGCTGC CCCGAGGGGG TTCGCACAGC ACTGGGCCCC ATGGCATCCG
GGCATGATCG CAGCAGTGGT GCTTTCACTG CTGCTGCTCG CCGTCACCTA TCTGGTCTGG
CAGGGTGTGG AGCGCGCACG GGACGAGCGC CGGCTGCAGG CTTTCGCCTT GTCCGTGGAC
CGCGTGGTTT CCAACCTGTC GGACCGCATC GCCGCCTACG AAATGGTGTT GCGTGGCGTC
AAGGGCTACT ACGAAGGCTC CGACAGCATC GACCAGCAGG AATTCCAGGC CTATGTGGAG
GCCTTGCACC TGCCGCAGAC GCGCCCGGGC CTGCAGGGCG TGGCGCTGCT GTCACGCGTG
GCGGAATCCA CCGGGGCGCG CACGGGGCAG GCGTTGATCA CGCACATCGC ACCCCAAACG
CCGGAAAACC AGCAGGAATT GGGACAGGAT GCCATGCTGC AGCCGGCGCG GCGCGAGGCG
CTGCTGCGCG CGCGCGACTC CGGGACGCTG GCGCTGTCGG GCCCGCTGGG CAGCCGCGAA
GGGAATGCCG GCAGCTCCCT GGTCATGTAC CTGCCGCTGT ATGCCAGACA CGCTGCCGTG
GACACTCTGG CCCAGCGCCG CCAGAACATT GCAGGCTGGG TGGCCGCGCC ATTTCGCATG
GACGACGTAA TCCAGGGCCT GGCGCGCGAG CTGGACAGCG ACCTTGCGCT GGCCATCCAT
GACGGCCCCT CGGTGGCAGG TGGGGTGCTC GTGTTTGCGT CGCGCACGGA CTATGCACCC
CACGCGGTCA ATGGCGGGCT GGAGGCCGTG CGCAGCTACG ACGTAGGCGG CAGGCGCTGG
ACGCTGGTGC TGTACCCGCT GCCCTCATTC GAGCAGCGCT TCGAAGGATC CACACACCAT
CTGGTTGCCC TGCTGGGCGC CGCCTTCAGC CTGCTGGCGG GATGGTTCGT GGGGCAGCAG
GTGAACGCGC GACAGCGGGC CATGGCGCTG GCCCGCGAGA TGACGCGCGA GTTGCGCCGC
ACGCGCGATG AGCTGGAAGC CACACTCAAT GCCGTGCCCG ATCTACTGTT CGAGGTGGAC
GCACAGGGAG GCATCCACCA CTACCGGTCC GCCCGCGCGG ACCTGATCGG CACGCGCGCC
CAGGCGCTGG TGGGGCGCAC GCTGGGGGAT GTGTTGCCGC CCGCTGCCGC CGCCGAATGC
ATGGCTGCGC TGGACGAGGC GGCCGAGTAC GGTTATTCCG AAGGGCGGCA GTACAGCCTG
GACATCGGGG GCAGCCAGCA TTGGTTCGAG CTGTCCGTGG CCTGCAAGCA GGGGGGGGCG
CCGCAGACCG GGGCCGGCCC GGGCCAGCGC CACTTCATCG CGCTGTCGCG CGACGTCACG
CGGCGCCACG AAGCCGAGGC CGCCATGTAC CGGCTCGCGT ATTTCGACGC GCTCACCGGC
CTGCCCAACC GCCGCCTGCT GCTGCAGCGC TTGCAGGATG CACTGGTCAC GGCCCAGCAG
CAGGGGGGCA TGGGCGCGCT GTTCTACATC GACCTGGACA ACTTCAAGGA GATCAACGAC
GCGCGCGGCC ACGGGGTGGG CGACGGGCTG CTGGTGCAGG TCGCCGCGCG CCTGCAGGAC
GCGGCCGGGC CGCAGGAGAC CGTGGCACGG CTGGGGAGCG ACGAATTCGT CATGCTGGTG
CCGCGGCTGG GCGACGGCCC TTCCGTTGCG CGTGAGCAGG CCTGCCGGCG CGCCCAGCAG
CTGCGCGAAT GCCTGGATGC GCCCTATGAC CTGGGCGGGG TGCACTACGG CAGTACCGGC
AGCATCGGCG TGACGCTGTT TCCCAAGAAC GGTGAGGCCG TGGAAGACCT GCTGCGCGAG
GCCGACACGG CCATGTTCTG TGCCAAGGAC CGGGGGCGCA ACCAGGTGTG CTTCTTTGAG
CAGGACATGC ACGCCGCAGC GCAGGAGCGC CTGGCGCTGC TGCAGGACCT CAAGAGCGCG
GTCGACAACG ACGCGCTGCT GACCTATGCG CAGCCGCAGG TGGATGCCGC CGGCCAGCTC
ATCGGCGCGG AGCTGCTGCT GCGCTGGCCG CATCCGCAGC GCGGCTTCGT GCCGCCGGCG
CAGTTCATCC CGGTGGCGGA ACAGGCGGGG TTGATCGTGC GCATGGGTGC GCGTGTCATC
CAGCAGGCCT GCGCCACGCT GGCCGAACTG CACCAGCAGG GCCGGGCGCT GTCGATCTCG
GTCAATGTCA GCCCCCGCCA GTTCCGCCAG GCGGACTTCG TGGAGCAGGT GCGCGCGGCG
CTGCACAGCA CGGGCGCGCC CGCGGCGCTG CTCACGCTGG AGGTCACGGA AAGCTTGCTG
GTGGAGAACT GGCAGGACAC CGCCCGGCGC ATGCACGAGC TGGTGGCGCT GGGCGTGCGC
TTTTCCATCG ATGACTTCGG CACCGGCTAC TCCAGCCTGG CGTATCTGAA GCGCCTGCCG
CTGTACGAAC TCAAGATCGA CCGCAGCTTC GTGCAGGACG CGCCCTCCGA CGCGAACGAC
GCGGCGATCG TGCAGGCCAT TCTTTCGGTC GCGCGCCACT TGCGCCTGCG CGTGGTGGCC
GAGGGGGTGG AGACGCGGCA GCAGGCGGAC TTCCTCATCG CCCACCACTG CCATGGCCTG
CAGGGCTATC TGTTCGGGCT GCCGCAGCCG CTGCGGGACT GGCTGGCGGG CCTCAAAGGC
TGA
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| Protein sequence | MNKEVAAPRG FAQHWAPWHP GMIAAVVLSL LLLAVTYLVW QGVERARDER RLQAFALSVD
RVVSNLSDRI AAYEMVLRGV KGYYEGSDSI DQQEFQAYVE ALHLPQTRPG LQGVALLSRV
AESTGARTGQ ALITHIAPQT PENQQELGQD AMLQPARREA LLRARDSGTL ALSGPLGSRE
GNAGSSLVMY LPLYARHAAV DTLAQRRQNI AGWVAAPFRM DDVIQGLARE LDSDLALAIH
DGPSVAGGVL VFASRTDYAP HAVNGGLEAV RSYDVGGRRW TLVLYPLPSF EQRFEGSTHH
LVALLGAAFS LLAGWFVGQQ VNARQRAMAL AREMTRELRR TRDELEATLN AVPDLLFEVD
AQGGIHHYRS ARADLIGTRA QALVGRTLGD VLPPAAAAEC MAALDEAAEY GYSEGRQYSL
DIGGSQHWFE LSVACKQGGA PQTGAGPGQR HFIALSRDVT RRHEAEAAMY RLAYFDALTG
LPNRRLLLQR LQDALVTAQQ QGGMGALFYI DLDNFKEIND ARGHGVGDGL LVQVAARLQD
AAGPQETVAR LGSDEFVMLV PRLGDGPSVA REQACRRAQQ LRECLDAPYD LGGVHYGSTG
SIGVTLFPKN GEAVEDLLRE ADTAMFCAKD RGRNQVCFFE QDMHAAAQER LALLQDLKSA
VDNDALLTYA QPQVDAAGQL IGAELLLRWP HPQRGFVPPA QFIPVAEQAG LIVRMGARVI
QQACATLAEL HQQGRALSIS VNVSPRQFRQ ADFVEQVRAA LHSTGAPAAL LTLEVTESLL
VENWQDTARR MHELVALGVR FSIDDFGTGY SSLAYLKRLP LYELKIDRSF VQDAPSDAND
AAIVQAILSV ARHLRLRVVA EGVETRQQAD FLIAHHCHGL QGYLFGLPQP LRDWLAGLKG
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