| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dtpsy_1882 |
|---|
| Symbol | |
|---|
| ID | 7382243 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax ebreus TPSY |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011992 |
|---|
| Strand | - |
|---|
| Start bp | 2002433 |
|---|
| End bp | 2003461 |
|---|
| Gene Length | 1029 bp |
|---|
| Protein Length | 342 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 643655199 |
|---|
| Product | Auxin Efflux Carrier |
|---|
| Protein accession | YP_002553339 |
|---|
| Protein GI | 222111075 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0679] Predicted permeases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGCAAGCGC GCCGCATCCC CAGGCCCTAC ACTTGCCGCC CGGCGCCGCG CCGGCACTTC
GACCCTCTGC CCACCTTGCT GTCCTCGATC CTCGTTCCCC TGGTTCCCGT CATTCTGTGC
ATCGGCATCG GCTACCTCAC CGCCCGCGTG GGCTGGGTGC GCGCCACGGC GGTGCCAGAT
CTGTCCAATA TCGTGTTCTT GGTGCTCACG CCCGCGCTGC TGTTTCGCAC CATGGGCAAT
GTGCGGCTCC AAGAGCTGGA CTTTCAGCCC GTGCTGCTGT ACTTCAGCGC GGCGGCGCTG
CTGTTCGGGC TGACGCTGGC GTTCAGCCGG TTCTCCACGG CCGCGGCGGC GCGGGCGCTG
GCGCACACCT TCAGCAACCT GGTGATGATC GGCGCGCCGC TCATGGGTCT GGTGTATGGG
CCGCAGGGCC TGGTGACGCT GTTCACGCTG GTGTCCCTGC ATTCGCTGGT GCTGCTGACG
GCGGCCACCA TGGTGTTCGA GCTGGCCGAG GCGCGCGAGC AGCAGCGCAC CGGCAGCGCC
GCGCCGCGCC CCATGGCGCA CACCGTGTGG CAGGCCGTGC GCAACAGCAT CGTGCACCCG
GTGCCGCTGC CCATCCTGGC GGGCCTGCTG TTCGCGCAGA CGGGCTGGAA GCTGCCCGAG
ATGCTGGACC GCCCGCTGCA GGTGCTGGCG GCGGCGCTGG GGCCCATGGC GCTGCTGCTG
GTGGGTATTG CGCTGGCGCA CACACGCATT GGCAACCACT GGCGCGGCGC GTTGCGGGTG
GCGGTGATCA AGAACCTGGC GCTGCCCGCC ACGCTGGGGA CGCTGGCGTG GGCGCTGGGG
CTGTCAGGCC CGGCGATCGC GGTGATGTTC ACCGCCGCGG CCATGCCGGT GGGCGCGAAT
GTGCTGTTGT TCACGCAGCG CTATGGCGTG ATGCAGGAGG AGGTGTCCTC GGCCATCGCG
CTGTCCACCG CGCTGGCGCT GATCACGCTG CCGGTGGTGC TGGTGTTGGC GCAGTTCTTC
ATGCATTGA
|
|---|
| Protein sequence | MQARRIPRPY TCRPAPRRHF DPLPTLLSSI LVPLVPVILC IGIGYLTARV GWVRATAVPD
LSNIVFLVLT PALLFRTMGN VRLQELDFQP VLLYFSAAAL LFGLTLAFSR FSTAAAARAL
AHTFSNLVMI GAPLMGLVYG PQGLVTLFTL VSLHSLVLLT AATMVFELAE AREQQRTGSA
APRPMAHTVW QAVRNSIVHP VPLPILAGLL FAQTGWKLPE MLDRPLQVLA AALGPMALLL
VGIALAHTRI GNHWRGALRV AVIKNLALPA TLGTLAWALG LSGPAIAVMF TAAAMPVGAN
VLLFTQRYGV MQEEVSSAIA LSTALALITL PVVLVLAQFF MH
|
|---|
| |