| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dtpsy_1826 |
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| Symbol | |
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| ID | 7382593 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidovorax ebreus TPSY |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011992 |
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| Strand | - |
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| Start bp | 1939995 |
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| End bp | 1943879 |
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| Gene Length | 3885 bp |
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| Protein Length | 1294 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 643655143 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_002553283 |
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| Protein GI | 222111019 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCCACTG AGGTGTTCCT CTCCGGCATC GTGCACCTGC TGCTGATCGC CGGGGCGACC
GCGCTGCCGC AACCCGTCCT GCTGCAACCC TCGCGCGGCG TGCGCATCGC GCTGGGCCTG
GTGGCCGGGG CGGCGTCGAC GCTGGTGGCC TTGCAGGGCA TGCCGCTAGA CGCGCCCGGG
GTGGCGTACA TCCACCCGCC CATCATCGTT TCCGCCGCGT TCCTGTTCGG GCCGTTGTGC
GGTGGCGTGG CCGCAGTGGC TGCGCTGGCC AGCGGCTGGC TGGACGCGCC GGCCCACTGG
GGCGCCATGA TCAGCCTGTC CGCGGCCTGT TGGCTGATGG GCTGCCTGGC GTGGCTGCTG
GGGCGCTCGA CACGCTTGAC GGCGATATCG CTGGTGGTCG CGCTCACCGT GCTGGTGCCG
CCCGCGCTGC TGCCCTGGAC CGAGACGGCC AGCGCCCTCG CTGCGCAGGA GGGATCGGCC
CCGTGGCAGG GCATTCCCTG GCGCTACGCC TTCGGCGTGG TGGCGCTGTG CGGCGCCGTC
GAGCTGCTGC GCGCGCGGGC CCGGTCGCTG CAGACGCTGG GACAGCACGA GGACGAGCTG
CTGCGCGTGC TCAAGGCCTC GGGCGGCGGG CGCTGGGAAT GGGATCTGCG CAACAGCCGC
TTCACCTACC ACGGGCGCTT TTACCGGGCT TTCGGTCTGG CCAACAGCCC CGACGACGAG
GACTTCACAC CGCTGCGCGC CTTCGATGTG CGCGAGTCAT GGCAGCGCTG GAACGCCCGG
CGCCACCCCG ACGACCGCGA GCGCCTGGGT GCGTACCTGC AGCGCGTGCA GGACGGGCTG
GAAGAGAGCT TCCATGCCGA GTCGCGCATG CGCGATGACG AGGGCCACTG GCGCTGGGTG
GTCTCGCGCG GGCACGCGGT GGAGCGCGAC TCCGCCGGCC GGGTGCTGCG CATGGCCGGC
ATTGACCTGG ACATCACCGA GCACCACGAG ATGCGCGACG CGCTGCGCGT GTCCGAAGCC
AAATACACCA CCGTCTACCA GACGCTGCCC GACGCCGCGG GCATCACCCG CCTGTCCGAC
GGGTGCTACC TGGACGTGAA CCCTGCGTTC GAGCGGTTGC TGGGCAAGCC GCGCGACCAG
ATTTTGGGGC GTTCGTCCAT GGAATTGGGC GTGTGGGGCG ACACGCAGGA GCGCGCCCGC
CTCACCGAGG CGCTGCGCAA CCAGGGCGAG GTCCGCGGCC TGCCGATGAC GGCGCTGCGC
GACGGCGCCG AAGTGCCGGG CCTCATGTCG GGACGGGTGT CGCGCATTGA GGGCGAGGAC
TGCCTGGTCT TCGTGTTCCA CGACATGACG CAGGAGCGCC GTGTGCGCGA TGAATTGCTC
GCCGCCAACC GCCTGCTGCG CCAGGCGGGC TGGATGGCGC GGCTGGGCGT GTGGGAGGAA
GAGCCGGGCA AAGGCATCAC CTATTGGTCC GACGTGTGCT TCGACATCCA CGGGCTGGAC
CCGGGCACGC CGCTGCCGCG CGACTATGTG CAGCAGTTCG TCGCACCCGT CTGGCGGGAA
GCCATGCACG CAGCCCTGCG CGACTGCCTG CGCAAGCGCA CTGTGTGGAG CCAGGAAATC
GAGATCGTGC GCGCCGATGG GCGCCTGGTC TGGGTGCGCG TGCGCGGGGA GCCCATCATC
GAGGGCGACC GCGTGGTGCG CGTGCGCGGC ATCCTGCAGG ACATCGACGA GCCGCGCCGC
GCGGCGCAGC GGCTGCGTTC TTCCGAAGAA CGGCTGGCGC GCATCTTCCA GCTGCTGCCC
TACCCGCTGG GGTTCTCGCG CCGCGAGGAC GGCACCTACC TCGACGTGAA TCCGGCGTGG
GAGCAGGCCC TGGGCTACAC CCGCCAGGAA GCCGTGGGGC GCACGGTGGT GGAACTGGGC
ATCTACTCCG CCCCCACCCG CGCGGCGCTG CTGGAGGCGG CGACGGCCGA AGGGCAGCTT
GTGGGCTACG AGCTGGAACT GACCACGCGC GGCGGCGACA AGCGCACCGT GCTGCAGTCC
ATGAGCCCCA TCGAAGTGAA CGGCGAGGCC TGCTGGCTGT TCGGCCTGCA CGACATCACC
GAGCGCAAGC AGACCGAACA GCGCGTACGC GAACGCGAGG AACTGCTGTC GCTCACCATC
GAGGCGGCGG CGCTGGGCCT GTGGGACTGG AACCTGCCCA GCGGCGAAGT CACGGGCGAC
GCGCGCTGGC GCGCCATGTA CGGGCTGGCG CCCGTGGAGC CTGGGGCCAG CGCTGCCGTG
CACTGGGCGT CGGGTATCAC GCCGGAAGAC ATCGACGTGG TCACCCAGGA GCTGCAGCGC
CACCTGCAGG AGCCGCACAA ACCGTTCGAC GTGACCTGCG AGGTGCTTGC CCCCCAGGGC
GACGGCCGCT GGATCCGCAG CGTGGGCAAG GTGGTGGCGT ACGACGCCGC CGGGCAGCCC
GCGCGCATGG TGGGCATGTC CATCGACGTG AGCAGCCAAC GCGCGCAGGA GCGGCAACTA
GAGCGCATGG CCCATTACGA CGCACTCACC GGCCTGCCCA ACCGGGTGAT GCTGGAGCGG
CGGCTGCGCG CAGGCATGGA GCACAGCCGT GCGCGCGGCC AGCAATTGGG CGTGGCCTAC
CTGGACCTGG ACGGCTTCAA GCCCGTCAAC GACCGCTTGG GCCACGCGGC GGGCGACCGG
CTGCTGGTGG TGGTGGCCGA GCGGCTCAAG CGCGCCCTGC GCCTGACCGA CTCGGTAGCG
CGGCTGGGCG GGGACGAGTT CGTGATCCTG CTGTCGGGCT TGGCCCATGC CGAGGAATGC
GAGCGGCGCC TGCATACGGT GATGGAGAGC GTCGCGGCCC CGTACACGCT GGACGGCGAG
CGCGTGCTGG TCACCGCCAG CATCGGCTAC ACCCTCTACC CCGACGATGA GGCCGACGCC
GACACCCTGT TGCGCCACGC CGACCAGGCC ATGTATGCGG CCAAGCAGGC GGGGCGCAAC
CGCTTCCATG GCTTTGACGC CGCCGAGGAG CGCGCCCGGC AACTGCGGCG CGAGCAGTGC
GGCGAACTGC TGCGCGCGCT GCAGCGTGGC GAACTGACAC TGTTCCTGCA GCCCAAAGTG
GACATGCGGC TGGGCACCGT GGTGGGGGCC GAGGCCCTGG CCCGCTGGCA GCACCCCGAG
CGCGGCCTGC TGTCGCCCGT GCATTTCCTG CACCTCATCG AAGGGCACAC CGAGCTGCAG
ATGCGTTTTG GCGAATGGGT GGTGGACACC GCGCTGCAGC AGATCGCCCG CCTGATGGCA
CAGGGTCTGG AACTGCCCGT CAGCATCAAC ATCACGCCCG AGCACCTGCA CCGCCGAGGC
TTTGCGGACT GGATGGCGTT GCGCCTGGCG CAGCACCCCG CGGTGCCGGC GCGGCTGCTG
GCCATCGAGC TCACCGAAAG CGCCGCGCTC TACGACATCG ACCACGTGGC GCGGGAGCTG
ACCAGACTGC GCGCGCTGGG CATGCAGATC TCGTTCGACG ACTTCGGCAC GGGCTACTCG
TCGCTGGCGT ACCTGCGCCG CCTGCCCATG GACCACCTCA AGCTGGACCG CAGCTTCGTC
GCCGGCATGC TGGGCGATGC GGGCGACCGG GCCATCGTGC AGGGCGTGAT CGGGCTGGCG
CACTCCTTTG GCTGCGGCAT CGTGGCCGAA GGGGTGGAAA CGGTGGAGCA AGGCCTGGCG
CTGCTGCAGA TGGGCTGCCA CCACGCGCAG GGCTACTGCA TCGCCATGCC CATGCCCGTG
GAGCAATTCA TGGACTGGGC GAAGGCCTGG CAGGCCCCCG CACCATGGCG CGCCACAAGC
CAGGCCGCCG CGCCCGTACC ACCGGCGGCG GCGATAGCCG CTTGA
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| Protein sequence | MPTEVFLSGI VHLLLIAGAT ALPQPVLLQP SRGVRIALGL VAGAASTLVA LQGMPLDAPG
VAYIHPPIIV SAAFLFGPLC GGVAAVAALA SGWLDAPAHW GAMISLSAAC WLMGCLAWLL
GRSTRLTAIS LVVALTVLVP PALLPWTETA SALAAQEGSA PWQGIPWRYA FGVVALCGAV
ELLRARARSL QTLGQHEDEL LRVLKASGGG RWEWDLRNSR FTYHGRFYRA FGLANSPDDE
DFTPLRAFDV RESWQRWNAR RHPDDRERLG AYLQRVQDGL EESFHAESRM RDDEGHWRWV
VSRGHAVERD SAGRVLRMAG IDLDITEHHE MRDALRVSEA KYTTVYQTLP DAAGITRLSD
GCYLDVNPAF ERLLGKPRDQ ILGRSSMELG VWGDTQERAR LTEALRNQGE VRGLPMTALR
DGAEVPGLMS GRVSRIEGED CLVFVFHDMT QERRVRDELL AANRLLRQAG WMARLGVWEE
EPGKGITYWS DVCFDIHGLD PGTPLPRDYV QQFVAPVWRE AMHAALRDCL RKRTVWSQEI
EIVRADGRLV WVRVRGEPII EGDRVVRVRG ILQDIDEPRR AAQRLRSSEE RLARIFQLLP
YPLGFSRRED GTYLDVNPAW EQALGYTRQE AVGRTVVELG IYSAPTRAAL LEAATAEGQL
VGYELELTTR GGDKRTVLQS MSPIEVNGEA CWLFGLHDIT ERKQTEQRVR EREELLSLTI
EAAALGLWDW NLPSGEVTGD ARWRAMYGLA PVEPGASAAV HWASGITPED IDVVTQELQR
HLQEPHKPFD VTCEVLAPQG DGRWIRSVGK VVAYDAAGQP ARMVGMSIDV SSQRAQERQL
ERMAHYDALT GLPNRVMLER RLRAGMEHSR ARGQQLGVAY LDLDGFKPVN DRLGHAAGDR
LLVVVAERLK RALRLTDSVA RLGGDEFVIL LSGLAHAEEC ERRLHTVMES VAAPYTLDGE
RVLVTASIGY TLYPDDEADA DTLLRHADQA MYAAKQAGRN RFHGFDAAEE RARQLRREQC
GELLRALQRG ELTLFLQPKV DMRLGTVVGA EALARWQHPE RGLLSPVHFL HLIEGHTELQ
MRFGEWVVDT ALQQIARLMA QGLELPVSIN ITPEHLHRRG FADWMALRLA QHPAVPARLL
AIELTESAAL YDIDHVAREL TRLRALGMQI SFDDFGTGYS SLAYLRRLPM DHLKLDRSFV
AGMLGDAGDR AIVQGVIGLA HSFGCGIVAE GVETVEQGLA LLQMGCHHAQ GYCIAMPMPV
EQFMDWAKAW QAPAPWRATS QAAAPVPPAA AIAA
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