| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dtpsy_1461 |
|---|
| Symbol | |
|---|
| ID | 7385103 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax ebreus TPSY |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011992 |
|---|
| Strand | + |
|---|
| Start bp | 1531710 |
|---|
| End bp | 1534814 |
|---|
| Gene Length | 3105 bp |
|---|
| Protein Length | 1034 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 643654778 |
|---|
| Product | heavy metal efflux pump, CzcA family |
|---|
| Protein accession | YP_002552923 |
|---|
| Protein GI | 222110659 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG3696] Putative silver efflux pump |
|---|
| TIGRFAM ID | [TIGR00914] heavy metal efflux pump (cobalt-zinc-cadmium) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.344532 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTGCAAC GTCTGATTGC CTTTGCCCTG GCGCAACGCC TGCTGATCGC GGTGCTGTCG
CTGGGCCTGG TGGGCGCGGG CTGGCTGGCG ATGCGTGACC TGCCCATTGA CGCCTTCCCG
GACGTCTCGA CCACCCAGGT GAAGATCATC CTCAAGGCTC CGGGCATGAC GCCTTCGGAG
GTTGAGGCGC GCATCGTCGC CCCCATCGAG CAGGAATTGC TGGGCATTCC ACACCAGTCG
ATGCTGCGCT CGCAGGCTAA ATACGCCATC GCCGACATTA CGCTGGACTT TACCGACGGC
ACCGACATCT ACTGGGCACG CCAGCAGGTC AGCGAGCGCC TGGCCGGTGT CATGGGCGAT
CTGCCCCAGG GCATCAGCGG TGGGTTGGCG CCCATCACCA CCCCGTTGGG CGAGATGTTC
ATGTTCACCG TAGAGGGCGA CGCGTCGCTG GCCGAAAAGC GCAAGCTGCT CGATTTCGTC
ATCCGGCCAC GCCTGCGCGG CATCCCCGGG GTGGCCGACG TGAACACCCT GGGTGGACTG
GTTCAGACTT TCGAGGTGGC GCCCGACATG GCCCGGCTGG CGGCGCGGCG CGTGTCGCTG
CAGCAGTTGC AAGACGCGCT GGCCGCCAAC AACCGTAACG ACGGCGCCGG ACGCCTTTCC
AGCGGCGAAG AGTCGCTGCT GGTGCTCAGC GACGGCAGCA TCACCAGCCT GGACGATCTG
CGCGCCGTTG TCGTGCGCTC GCAAGATGGG CAGGCCACAG CAGCGCCCGT ACGCGTGGGC
GATGTGGCCG AGGTGCGCCT GGGCGCCCTT ACACGCTACG GCAGCGTCAC GCAGAACGGC
CAGGGCGAGG CCGTGCAGGG GCTGGTGCTG GGACTGCGCG GTGCCAATGC GCGCCAGCTG
GTGCACGACG TGCAGGCGCG CCTGCAGGAG ATCGAGGCCA GCCTGCCCGA AGGCATGAAG
ATCGTGCCGT TCTACAACCG TGGCAGCTTG GTCGAGCGCG CCGTGGGCAC GGTCAGCAAG
GCGCTTGCCG AGGCCATTGC CCTGGTGCTC GTCTTGCTGC TGCTGTTCCT GGGCAACCTG
CGCGCGGCGC TGGTGGTGGC GCTCATTTTG CCGCTGTCGG CGCTCGCCAC GTTCGTGCTC
ATGCGCCAGT GGGGGCTGTC TGCCAACCTC ATGTCGCTGG GGGGGCTGGC CATTGCCATC
GGCATGCTGG TCGATGCCGC CGTGGTGGTG GTCGAAAACA TCGAAGCGCG TCCGGTAGAG
CCGGGTACGC CGCGCCTGCA CGCGCTGTAC CGGGCCACGC AGGAGGTGGC CACCCCCGTG
GGCGCGGGCG TCGCCATCAT CATGATCGTG TTCCTGCCGC TGCTCACGCT GCAGGGGCTG
GAAGGCAAGC TGTTTGGCCC GGTGGCGCTG ACCATCGTGT TTGCGCTGGG GGCATCGCTG
CTGTTGTCGC TCACGGTGAT TCCGGTGCTC GCCTCGTGGC TGCTGCGCCC GCATGCACCC
GGCCACCATG CCAGCCCGTG GCTGGTGCGC AAGCTCGAGG CGGGCTATGC CCCGCTGCTT
GATGCCGCGC TGCGCCATCC GCGCGTGGTG GGGGCGGGGG CGGTGCTGGC GCTGGCGGGG
GCCTTGGCGC TGTTTCCGTT CATCGGCAAG TCGTTCATGC CGTCGCTGGA CGAGGGCGAC
ATCATCATGC AGGTGGAAAA GCTCCCCTCC ATCAACCTGG AGCAGTCCGC CGCGACGGAC
CAGGCGCTGC AGCGCCGCAT CCTGGCGCAG GTGCCCGAGG TCGAGCGCAT CGTGGCCCGC
GTGGGCTCGG ACGAGTTGGG CCTTGACCCC ATGGGCCTGA ACGCGACCGA CAGCTTCCTG
GTGCTCAAGC CGCGCGCCGA ATGGCGCTTC AAGACCAAGG AAGAGCTCAT CGACGCCATC
CGCGCTGCTG CCGAGGCGGT GCCCGGCGTG AACCTGAGCT TCACCCAGCC GATCGAAATG
CGCACCTCCG AAATGCTCTC GGGCGTGCGC GGCGACTTGG CCGTGAAGGT CTTTGGTCCC
CAGGCGCAAG AGCTTTCGCG CCTGGCCGAA GAAGTCGTGC AGGTGCTGCA GGGCCTGCCA
GGCAGTGAGG ACGTGCTCAC CACCAAGAAC GACGGCGTGC AGTACCTGCG CGTGGCCCTC
GACCGCCAGG CCCTCGGCCG CCTCGGGTTG TCGGTGGAGC AAGTGCAAAA CGACTTGCGC
ACGCTGGTCG AAGGCCAGCG CGCGGGCGTG GTCATGCAGG ACGCGCGGCG TGTGCCTCTG
GTGGTGCGCG GTAGCGATGA CCTGCGCATG TCGCCGGAAC GCTTTGCCGC TCTGCGCCTG
CCCGTGCCGG GCGGCGACGC GGTGGCGCTG TCGCAGCTGG CGCGGCTGGA AGTGGCCGAC
GGGCCGGTGA AGATCGAGCG CGAGCAGTCC TCGCGCATGG CCGTGGTGCG CGCCAACGTG
CGTGGCCGCG ACCTGGTGGG CTTCGTGGCC GAGGCACAGG CCGCAGTGGC CCAGAAGGTA
AAGCTGCCAC CGGGCTACAG CCTGGCCTGG GGTGGTCAGT TCGAGAACCA GCAGCGCGCC
GCCGCGCGCC TGGGCATGGT GGTGCCGGTG GCGTTGGCCC TCATCGTCGG CTTGCTGTTT
GCCACCCTGG GCAGCCTGCG CCAGGCGTTG CTGGTGTTCG CCAATATTCC GCTGGCTCTG
GTGGGCGGCA TCGTGGCCCT GGCACTCACG GGGGAATACC TGTCGGTGCC CGCGTCGGTC
GGCTTCATTG CGCTCATGGG GATTGCCGTG CTCAACGGGC TGGTGCTCGT CACCTGCTTC
AACCAGCTGG CCGCACGCGG CATGCCGATG GCCGAAGTGG TGCGCCAAGG TGCGCTGCGC
CGCCTGCGTC CGGTGCTGAT GACGGCCAGC ATCACCGCGC TGGGGCTGAT TCCGCTGCTA
CTGGCCACGG GGCCCGGCTC GGAAATTCAG CGCCCGCTGG CCATCGTGGT GATCGGCGGG
CTGGTCAGCT CCACCTTCCT CACGCTGGTG CTGCTGCCGC TGCTCTACCG CCGCTTTGGT
CTTTCCTCTC CTTCCCCGCG CGCCGCAGGC GCCGTCTCGC CATGA
|
|---|
| Protein sequence | MLQRLIAFAL AQRLLIAVLS LGLVGAGWLA MRDLPIDAFP DVSTTQVKII LKAPGMTPSE
VEARIVAPIE QELLGIPHQS MLRSQAKYAI ADITLDFTDG TDIYWARQQV SERLAGVMGD
LPQGISGGLA PITTPLGEMF MFTVEGDASL AEKRKLLDFV IRPRLRGIPG VADVNTLGGL
VQTFEVAPDM ARLAARRVSL QQLQDALAAN NRNDGAGRLS SGEESLLVLS DGSITSLDDL
RAVVVRSQDG QATAAPVRVG DVAEVRLGAL TRYGSVTQNG QGEAVQGLVL GLRGANARQL
VHDVQARLQE IEASLPEGMK IVPFYNRGSL VERAVGTVSK ALAEAIALVL VLLLLFLGNL
RAALVVALIL PLSALATFVL MRQWGLSANL MSLGGLAIAI GMLVDAAVVV VENIEARPVE
PGTPRLHALY RATQEVATPV GAGVAIIMIV FLPLLTLQGL EGKLFGPVAL TIVFALGASL
LLSLTVIPVL ASWLLRPHAP GHHASPWLVR KLEAGYAPLL DAALRHPRVV GAGAVLALAG
ALALFPFIGK SFMPSLDEGD IIMQVEKLPS INLEQSAATD QALQRRILAQ VPEVERIVAR
VGSDELGLDP MGLNATDSFL VLKPRAEWRF KTKEELIDAI RAAAEAVPGV NLSFTQPIEM
RTSEMLSGVR GDLAVKVFGP QAQELSRLAE EVVQVLQGLP GSEDVLTTKN DGVQYLRVAL
DRQALGRLGL SVEQVQNDLR TLVEGQRAGV VMQDARRVPL VVRGSDDLRM SPERFAALRL
PVPGGDAVAL SQLARLEVAD GPVKIEREQS SRMAVVRANV RGRDLVGFVA EAQAAVAQKV
KLPPGYSLAW GGQFENQQRA AARLGMVVPV ALALIVGLLF ATLGSLRQAL LVFANIPLAL
VGGIVALALT GEYLSVPASV GFIALMGIAV LNGLVLVTCF NQLAARGMPM AEVVRQGALR
RLRPVLMTAS ITALGLIPLL LATGPGSEIQ RPLAIVVIGG LVSSTFLTLV LLPLLYRRFG
LSSPSPRAAG AVSP
|
|---|
| |