| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dtpsy_1391 |
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| Symbol | rpsA |
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| ID | 7382643 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidovorax ebreus TPSY |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011992 |
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| Strand | - |
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| Start bp | 1456054 |
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| End bp | 1457739 |
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| Gene Length | 1686 bp |
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| Protein Length | 561 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 643654709 |
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| Product | 30S ribosomal protein S1 |
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| Protein accession | YP_002552855 |
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| Protein GI | 222110591 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0539] Ribosomal protein S1 |
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| TIGRFAM ID | [TIGR00717] ribosomal protein S1 |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.00553115 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCTGAAT CTTTTGCCGC CCTTTTTGAA GAGTCGTTGA CACGCACCGA AATGCGTCCC
GGCGAAGTCA TCACCGCTGA AGTCGTGCGC GTGGAGCACA ACTTCGTCGT GGTGAACGCT
GGCCTGAAGT CGGAAGCCTA TGTGCCGATC GACGAATTCA AGAACGACCA GGGCGAGATC
GAAGTCCAAG TGGGCGACTT CGTGTCCGTG GCCATCGGCT CGATCGAAAA CGGCTACGGC
GACACCATCC TGTCGCGCGA CACCGCAAAG CGTCTGGCCT CCTGGCTGTC GCTGGAGAAG
GCGCTGGAAT CCGGCGAATT CGTGACCGGC ACGACCTCCG GCAAGGTCAA GGGCGGCCTG
ACGGTGCTGG TCAACGGCAT CCGCGCCTTC CTGCCCGGTT CGCTGATCGA CACCCGTCCC
GTCAAGGACC TGACTCCGTA CGAAAACAAG ACCCTGGAGT TCAAGGTCAT CAAGCTGGAC
CGCAAGCGCA ACAACGTGGT GCTGAGCCGC CGCGCCGTGG TGGAAGCCTC CATGGGCGAA
GAGCGCGCCA AGCTGATGGA AACGCTGAAG GAAGGCGCCA TCGTCAACGG CGTGGTCAAG
AACATCACCG AATACGGTGC GTTCGTGGAC CTGGGCGGCA TCGACGGCCT GCTGCACATC
ACCGACATGG CATGGCGCCG CGTGCGCCAC CCCTCCGAGG TGGTCACCGC CGGCCAGGAA
ATCACGGCCA AGATCCTCAA GTTCGACACC GAGAAGAACC GCGTCTCGCT GGGCCTCAAG
CAAATGGGCG ACGACCCGTG GCTGGGCGTA TCGCGCCGCT ACCCCTCGGG CACGCGCCTG
TTCGGCAAGG TCACGAACAT CGCCGACTAC GGCGCGTTCG TCGAACTGGA GCCCGGCATC
GAAGGCCTGG TGCACGTCTC CGAAATGGAC TGGACCAACA AGAACGTGGC TCCTTCCAAG
CTCGTGTCGC TGGGTGACGA AGTCGAAGTC ATGGTCCTGG AGATCGACGA AGACAAGCGC
CGCATCAGCC TGGGCATGAA GCAGTGCAAG GCCAACCCCT GGCAAGAATT CGCGCAGGAC
ACCAAGCGCG GCGACCGCGT CAAGGGCCCG ATCAAGTCGA TCACCGACTT CGGCGTGTTC
GTGGGCCTGG CTGCCGGCAT CGACGGCCTG GTGCACCTGT CCGACCTGTC CTGGAACGAG
CCCGGCGAAT CCGCCGTGCG CAACTACAAG AAGGGCCAGG AAGTCGAGGC GATCGTGCTG
GCCGTGGACG TGGACCGCGA GCGTATCTCC CTGGGCATCA AGCAGCTCGA CGGCGACCCG
TTCACCACCT TCGTGACGGT GAACGACAAG GGCCAGACGG TGACCGGCAA GGTCAAGACC
GTGGACGCCC GTGGCGCCGA GATCGATCTG GGCGAAGACA TCGTGGGCTA CCTGCGCGCC
TCGGAAATCT CCCGCGACCG CGTGGAAGAT GCCCGCAACG TGCTGAAGGA AGGCGACGAA
GTCACGGCCG TGGTGGTGAA CGTGGATCGC AAGACCCGCA ACATCCAGCT GTCCATCAAG
CAAAAGGACA TGGTTGACCA ACAGGAAGCC ATGGCGCACC TGTCGGCCCA GTCCGCGAAG
GAAAACGCCG GTACCACCAG CCTGGGCGCC CTGCTGCGCG CCAAGCTGGA CAACTCCGAC
AAGTAA
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| Protein sequence | MSESFAALFE ESLTRTEMRP GEVITAEVVR VEHNFVVVNA GLKSEAYVPI DEFKNDQGEI
EVQVGDFVSV AIGSIENGYG DTILSRDTAK RLASWLSLEK ALESGEFVTG TTSGKVKGGL
TVLVNGIRAF LPGSLIDTRP VKDLTPYENK TLEFKVIKLD RKRNNVVLSR RAVVEASMGE
ERAKLMETLK EGAIVNGVVK NITEYGAFVD LGGIDGLLHI TDMAWRRVRH PSEVVTAGQE
ITAKILKFDT EKNRVSLGLK QMGDDPWLGV SRRYPSGTRL FGKVTNIADY GAFVELEPGI
EGLVHVSEMD WTNKNVAPSK LVSLGDEVEV MVLEIDEDKR RISLGMKQCK ANPWQEFAQD
TKRGDRVKGP IKSITDFGVF VGLAAGIDGL VHLSDLSWNE PGESAVRNYK KGQEVEAIVL
AVDVDRERIS LGIKQLDGDP FTTFVTVNDK GQTVTGKVKT VDARGAEIDL GEDIVGYLRA
SEISRDRVED ARNVLKEGDE VTAVVVNVDR KTRNIQLSIK QKDMVDQQEA MAHLSAQSAK
ENAGTTSLGA LLRAKLDNSD K
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