| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dtpsy_1360 |
|---|
| Symbol | |
|---|
| ID | 7382612 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax ebreus TPSY |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011992 |
|---|
| Strand | + |
|---|
| Start bp | 1421936 |
|---|
| End bp | 1422838 |
|---|
| Gene Length | 903 bp |
|---|
| Protein Length | 300 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 643654678 |
|---|
| Product | RarD protein, DMT superfamily transporter |
|---|
| Protein accession | YP_002552824 |
|---|
| Protein GI | 222110560 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2962] Predicted permeases |
|---|
| TIGRFAM ID | [TIGR00688] rarD protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.0549521 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGATCCAAG GTCTTGTTGC GTCCATCGTC GCGTCCGTTC TGTTCGGCGC CATGTATTAC
CTGGCACCGG CGCTGGCGCC GCTGGATGGC GAGCAAATCT TCGGCTGGCG CGTGCTGTGC
ACGCTGCCGT TCACCACGGC GCTGCTGCTG GCGCGCGGGC AGTGGCCGCG CGTGCGCCTG
CTGGCTGCGC GCGCGTGGCG GCAGCCGCTG CTGGCGCTGG GGCTGCTGGC CAGCGCCGCC
ATGCTGGGCG TGCAGCTGTG GCTGTTTTTA TGGGCGCCGC TGCACGGGCG GGCACTGCCG
GTGTCGCTGG GCTACTTCCT GCTGCCGTTG GTGATGGTGC TGGCCGGGCG GGTGCTGTAC
CGCGAGCGGC TGTCGCACCT GCAGTGGCTG GCCACGGCAC TGGCGGGCGC GGGTGTGCTG
CACGAGGTGC TGCGCGCCGG CGGCATGTCG TGGGAGACCT GGCTGGTCGC GCTGGGCTAC
ACCGCGTATT TCGTGCTGCG CCGGCGCCTG GCCACCGACC ACCTGGGCGG CCATTGGCTG
GACATGCTGC TGCTGGTGCC CGCGGCGCTG TGGTTCGTGG TGCGCGCGCC GTCGTCCCTT
CCGCTGGTGC TGGAGCATGC GCACCTATGG GCGATGGTGC CCGTCCTGGG CGTGCTCAGC
GCCGTGGCGC TGGCGTTGTA CATGGCCGCC AGCCGCCTGC TGCCGCTGGG GTTGTTTGGT
CTCTTGAGCT ATGTGGAGCC GGTGCTGCTG GCACTGGTGG CGCTGGCGCT GGGCGAGAGC
ATCGGCGCGG CGCAGTGGCC CACCTACGGC CCCATTTTCG CCGCCGTGGC TCTGCTGGTG
CTGGACGGCG CACTGCGCCT GCGCCGTCCA GCCGTGCAGG TTCAAGACAA AAAACCGCTC
TAG
|
|---|
| Protein sequence | MIQGLVASIV ASVLFGAMYY LAPALAPLDG EQIFGWRVLC TLPFTTALLL ARGQWPRVRL
LAARAWRQPL LALGLLASAA MLGVQLWLFL WAPLHGRALP VSLGYFLLPL VMVLAGRVLY
RERLSHLQWL ATALAGAGVL HEVLRAGGMS WETWLVALGY TAYFVLRRRL ATDHLGGHWL
DMLLLVPAAL WFVVRAPSSL PLVLEHAHLW AMVPVLGVLS AVALALYMAA SRLLPLGLFG
LLSYVEPVLL ALVALALGES IGAAQWPTYG PIFAAVALLV LDGALRLRRP AVQVQDKKPL
|
|---|
| |