| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dtpsy_1319 |
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| Symbol | |
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| ID | 7382408 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidovorax ebreus TPSY |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011992 |
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| Strand | + |
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| Start bp | 1378305 |
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| End bp | 1380764 |
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| Gene Length | 2460 bp |
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| Protein Length | 819 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 643654638 |
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| Product | conjugal transfer ATPase TrbE |
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| Protein accession | YP_002552784 |
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| Protein GI | 222110520 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3451] Type IV secretory pathway, VirB4 components |
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| TIGRFAM ID | [TIGR00929] type IV secretion/conjugal transfer ATPase, VirB4 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTGAACC TCGCCGAATA TCGACAGCGT CCGGCCCTGC TCGCCGACTG GCTTCCGTGG
GCCGGGCTGG TCGCGCCGGG CGTCGTCTTG AACAAGGATG GCAGTTTCCA GCGCACGGCG
CGCTTTCGTG GGCCTGACCT CGACAGCGCG ACGCAGGGCG AGCTGATCGC CACGTCGGCG
CGCTTGAACA ACGCGCTGCG CCGGCTCGGC TCGGGCTGGG CGCTCTTCAT CGAGGCCGAG
CGCCGGCCCG CCGCCAACTA TCCGCACTCG GAGTTCCCCG AGCCTTTGTC GTGGCTGGTG
GACGAGGAAC GCCGGGCCAC CTTCGAGGAA TCGGGCAACC ACTTCGAGAG CGGTTATCAC
CTGACACTGG CGTACCTGCC GCCCGAGGAA TCACGCGCCC GCGCGGAGGG GATGCTGTAC
GAGAACCGTC CCACCGAAGG CGTGGACTGG CGCGAGCGCC TGACGGCCTT CGTGGCGGAA
ACGGATCGCG TCTTTGACCT GCTCGATGGC GTGATGCCGG AGATAGCCTG GATCGATGAC
GGGCAGACGC TGACCTACCT GCACGCGACC ATCTCGACGC GGCGCTATCG AGTGGCGGTG
CCCGAAGTGC CGTTTCACAT CGACGCGCTG CTGGCCGATT CCGCACTGGT CGGTGGCTTG
GCTCCCATGC TGGGCGAGCA GCACCTGCGC GTGGTGTCGG TGCGGGGTTT TCCGACCTCG
ACCTGGCCGG GGATTCTGGG CGAACTCAAC CGCCTGGGCT TTGCCTATCG CTGGAGTACG
CGCTTTCTCT GCCTGGACAA AGCCGAGGCG GAAAACGAAC TCACCCGCCT GCGCCGCCAA
TGGTTTGCCA AGCGCAAAAA CGTGATGGCG CTGCTGCGCG AGACCATCTT CCAGCAGGAA
TCGCCGCTGG TCGATACCGA CGCCAGCAAC AAGGCGGCCG ACGCCGATGC CGCCTTGCAG
GAGCTGGGCG GCGATCAAGT CGCCTTCGGT TACCTCACCG CCACGGTGAC GGTGCTCGAT
GCCGATCCGG CCGTGGCCGA CGAGAAGCTG CGCATGGTAG AGCGCGTCAT CCAGGGCCGG
GGCTTTGTGA CGATTCCCGA AACCCTGAAC GCGGTCGATG CTTGGCTGTC TTCGATCCCT
GGCAACGCCT ACGCCAATGT GCGCCAGCCC ATCGTCTCGA CGCTGAACCT GGCGCACATG
ATGCCGGTGT CGGCGGTGTG GGCCGGGCCG GAGAAGAACG CGCACCTCGA TGGCCCGCCG
CTGATCGTCA CGCGCACCGA CGGCGCGACG CCGTTCCGGC TGGTCACGCA CATCGGCGAC
GTGGGCCACA CGCTGGTCGC TGGCCCGACG GGCATGGGCA AGTCCGTCTT GCTCGCCATG
CTGGCTATGC AGTTCCGGCG CTACTCCGGC TCGCGCATCT TTGCCTTCGA CATGGGCCGC
TCCATGCGCG CCACCATCCT CGGGCTGGGC GGCGAGCACT ACGACCTGGG TGCCGATGGC
GAAATTGCCT TCCAGCCGCT CGCGCGCATC GACCGCGAGG GCTACCGCAC CTGGGCCGCT
GAATGGATCG AAGGCAGACT ACTACATGAA GGCGTGGCGG TCGGCCCCGA TGAGAAGGTC
GCAATCTGGT CGGCGCTGGG AAGCCTCGCC GGTGCGCCGC TGGAGCAGCG CACCGTGACC
GGGCTTTCCG TGCTGCTGCA ATCGAACGCG CTGCGCCAGG CCCTCGCGCC CTATGTGCTC
GGTGGCGCCC ACGGCAGGCT TCTGGACGCC GACCATGACC AGCTGGGCAT GGCCGACGTG
CAGTGCTTCG AGATGGAGGA ACTGATGCAC AGCAAGGCCG CCGTCATGGC CGTGCTGGGC
TATCTGTTCG CGCGCTTCGA CGAACGCTTC GACGGTGCGC CCACGCTGCT GATGCTCGAT
GAGGCGTGGC TGTTTCTCGA TGACCTGGTA TTCGCGGCAC GCATCCGGCA GTGGCTCAAG
ACGCTGCGCA AGAAGAACGT GTCGGTGATC TTCGCTACGC AGAGCCTTGC CGACATCAAG
GATTCGAGCA TTGCGCCCGC GATCATCGAA AGCTGCGCCA GCCGCATTTT CCTGCCCAAC
CCGCAGGCCA CCGAGCCGCA GATTCGCACG ATCTACGAGG GCTTCGGGTT GAACTCGCGC
CAGATCGAGA TCGTGGCGAC CGCGCAGCCC AAGCGCGACT ACTACTACCA GTCCCGCCTC
GGCAATCGCC TGTTCGACCT CGACCTGGGG CCGGCCACGC TGGCCTTTGC GGGCGCTTCC
ACGCCGCAGG ACCAGCGCGA CATGGATCGC GTGTTGCTGG ATGCCGGCGT GACCGGCTTC
GCGGGCGCCT GGCTGCGCCA TCGCAGGCTC GATTGGGCGG CCGACCTGCT GCCCTCACTC
CCCGGACTTG CGCCGGGTTC CTCTCGTACC GCTGACCACC CACAGGAGAA CCAGCCATGA
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| Protein sequence | MLNLAEYRQR PALLADWLPW AGLVAPGVVL NKDGSFQRTA RFRGPDLDSA TQGELIATSA
RLNNALRRLG SGWALFIEAE RRPAANYPHS EFPEPLSWLV DEERRATFEE SGNHFESGYH
LTLAYLPPEE SRARAEGMLY ENRPTEGVDW RERLTAFVAE TDRVFDLLDG VMPEIAWIDD
GQTLTYLHAT ISTRRYRVAV PEVPFHIDAL LADSALVGGL APMLGEQHLR VVSVRGFPTS
TWPGILGELN RLGFAYRWST RFLCLDKAEA ENELTRLRRQ WFAKRKNVMA LLRETIFQQE
SPLVDTDASN KAADADAALQ ELGGDQVAFG YLTATVTVLD ADPAVADEKL RMVERVIQGR
GFVTIPETLN AVDAWLSSIP GNAYANVRQP IVSTLNLAHM MPVSAVWAGP EKNAHLDGPP
LIVTRTDGAT PFRLVTHIGD VGHTLVAGPT GMGKSVLLAM LAMQFRRYSG SRIFAFDMGR
SMRATILGLG GEHYDLGADG EIAFQPLARI DREGYRTWAA EWIEGRLLHE GVAVGPDEKV
AIWSALGSLA GAPLEQRTVT GLSVLLQSNA LRQALAPYVL GGAHGRLLDA DHDQLGMADV
QCFEMEELMH SKAAVMAVLG YLFARFDERF DGAPTLLMLD EAWLFLDDLV FAARIRQWLK
TLRKKNVSVI FATQSLADIK DSSIAPAIIE SCASRIFLPN PQATEPQIRT IYEGFGLNSR
QIEIVATAQP KRDYYYQSRL GNRLFDLDLG PATLAFAGAS TPQDQRDMDR VLLDAGVTGF
AGAWLRHRRL DWAADLLPSL PGLAPGSSRT ADHPQENQP
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