Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dtpsy_1240 |
Symbol | |
ID | 7383144 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Acidovorax ebreus TPSY |
Kingdom | Bacteria |
Replicon accession | NC_011992 |
Strand | + |
Start bp | 1301789 |
End bp | 1304083 |
Gene Length | 2295 bp |
Protein Length | 764 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 643654561 |
Product | ribonuclease R |
Protein accession | YP_002552707 |
Protein GI | 222110443 |
COG category | [K] Transcription |
COG ID | [COG0557] Exoribonuclease R |
TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases [TIGR02063] ribonuclease R |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGTATATCA AAAAAAATCA CTCTGAATCA TCCGTCGCCA AAGTTTCACT GGACGAGATC GAAGGCACCG TCCAGGGACA CCGCGACGGG CATGGCTTCG TCCTGCGCGA TGACGGCCAG CCTGACATTT ACCTTCCTGC CAATGAGATG CGGGCGGTAT TGCACAAGGA CCGGGTGCGC GTGCGCATCG CGCGCCAGGA CCGGCGCGGC CGGCCTGAAG GCCGCGTGGT CGAGATTCTG GAGCGCCCGC CCCAACCCAT CATCGGGCGC CTTCTTCAGG AGAGCGGTGT CTGGCTGGTC GCCCCTGAGG ACAAACGGTA CGGCCAGGAC GTGCTGATTC CCAAGGGTGC TACGGGGGCT GCTGCGACGG GACAGGTCGT GGTGGTGGAA CTGACCGAGC CGCCGGCTTT GTTTGGGCAA CCCGTGGGGC GGGTGGTCGA AGTGCTGGGG GAGGTAGATG ACCCCGGGAT GGAGGTGGAA ATTGCCGTGC GCAAATACGG GGTTCCGCAC GAATTCTCCG AAGCGTGCCT TGACCAGGCG AAGGCGCTGC CGGACAAGGT GCGCGCTCAG GACAAGCGTC GACGCGTTGA TCTGACGGAT GTCCCCCTGG TCACCATCGA TGGTGAAGAT GCGCGCGACT TCGACGACGC GGTGTATTGC GAGCCCGCCA AGATCGGGCG CGCCAAGGGG TGGCGCCTGC TCGTGGCCAT CGCGGACGTG AGCCACTATG TGGAGACGGG CAATGCCATC GATATTGACG CCTACGACCG GGCGACCAGC GTTTATTTCC CGCGGCGCGT TATCCCCATG CTGCCGGAGA AGCTCTCCAA CGGGCTGTGC TCGCTGAACC CCCATGTCGA GCGCCTGTGC ATGGTGTGCG ACATGATGGT TACCGCCAAA GGTGAAATTC ACGCCTATCA GTTCTATCCT GCGGTCATGC TCAGCCACGC GCGGCTTACC TATACCGAGG TGGCTGCGGT GCTGGCCAAT ACGCGCGGCC CGGAAGCGCT GAAGCATCAA GAGCGCGTGG GCAACCTGCT CAACCTCTAC GAGGTCTACC GCGCATTGCT AGCCGCGCGG CAGGCGCGCG GCGCCGTGGA CTTCGAGACG ACCGAGACGC AAATCGTCTG TGATGACAAT GGCCGTATCG AGAAAATCGT CCCCCGTGTA CGCACCGAGG CGCACCGCCT GATTGAGGAG GCGATGCTCG CCGCCAACGT CTGCAGCGCC GATTTCATCG GTCATGCCGG CCGGGCGGGG CTGTATCGCG TTCATGAGGG GCCTACGCCG GAGAAGCAAG AGATCCTGCG TGCATATCTC AAAGCCATGG GTGTTGGCAT GTCGATCGGG GACGATCCGC GGCCGGCAGA ATTCCAGGCG ATTGCCGAGG CCACCAAGGA CCGGGTGGAT GCGCAGCAGA TCCACACCAT GCTGCTGCGT TCGATGCAGC AGGCGATCTA CACGCCTGTC AACAGCGGTC ACTTCGGTTT GGCATTCGAA GCCTATACAC ACTTCACCAG TCCTATTCGC CGCTACCCGG ATCTGCTGGT GCATCGCGTG ATCAAGTCCA TCTTGAGCGG CACCAAATAT GTGCTGCCCG CGCTGCCGAC GCCGGGGGAG GCTCAGTTCA AGCTGGCCAA GCGTCTGGCT TCCAAGGGCG GAGAATCCTC TGCACGCCCT TCCAAGACGG GTGGCGTTAT CAGCGTCCGG GAGACGCAGG CGTGGGAGGC CGCGGGACTG CACTGCAGTG CGAACGAACG CCGTGCGGAC GAGGCCAGTC GTGACGTGGA AGCATGGCTC AAGTGCCAGT ACATGCGTGA GCATCTGGGT GAGGAGTACA GCGGTGTCGT CAGCGCGGTG ACGAGCTTCG GCATCTTCGT GACGCTTGAT GCCCTCTATG TGGAAGGGCT GGTGCACATC ACGGAACTGG GTGGGGAGTA CTTTAAGTTC GATGAGGCGC GGCAAGAACT GCGGGGGGAG CGCACGGGTA TCCGCTATGC GATTGGTGCA CGCGTGCGTG TTCAGGTCAG CCGCGTCGAC CTCGATGGCC GCAAGATCGA CTTCCGGCTG GTGCATGAAG CCGGCGATGG TTTCTCCACC AAAGGCCCCA AGTCCAGGGA CGGCGCGAAA CGCGGGTCCT CGGCAGCGGC CTTGGATGGT CGATCCGCCT CGGTGCCCAC GGCCCGGGAA AGCAGAGAGG AGGGGAGCCG GCGGCGCCCG CACAAGCAGG CCTTGGCCGG CAAAAAAGCG GCAGGTGGCA AGAACCCCTC TAAGGGCCGC AAATCCCGCG GTTGA
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Protein sequence | MYIKKNHSES SVAKVSLDEI EGTVQGHRDG HGFVLRDDGQ PDIYLPANEM RAVLHKDRVR VRIARQDRRG RPEGRVVEIL ERPPQPIIGR LLQESGVWLV APEDKRYGQD VLIPKGATGA AATGQVVVVE LTEPPALFGQ PVGRVVEVLG EVDDPGMEVE IAVRKYGVPH EFSEACLDQA KALPDKVRAQ DKRRRVDLTD VPLVTIDGED ARDFDDAVYC EPAKIGRAKG WRLLVAIADV SHYVETGNAI DIDAYDRATS VYFPRRVIPM LPEKLSNGLC SLNPHVERLC MVCDMMVTAK GEIHAYQFYP AVMLSHARLT YTEVAAVLAN TRGPEALKHQ ERVGNLLNLY EVYRALLAAR QARGAVDFET TETQIVCDDN GRIEKIVPRV RTEAHRLIEE AMLAANVCSA DFIGHAGRAG LYRVHEGPTP EKQEILRAYL KAMGVGMSIG DDPRPAEFQA IAEATKDRVD AQQIHTMLLR SMQQAIYTPV NSGHFGLAFE AYTHFTSPIR RYPDLLVHRV IKSILSGTKY VLPALPTPGE AQFKLAKRLA SKGGESSARP SKTGGVISVR ETQAWEAAGL HCSANERRAD EASRDVEAWL KCQYMREHLG EEYSGVVSAV TSFGIFVTLD ALYVEGLVHI TELGGEYFKF DEARQELRGE RTGIRYAIGA RVRVQVSRVD LDGRKIDFRL VHEAGDGFST KGPKSRDGAK RGSSAAALDG RSASVPTARE SREEGSRRRP HKQALAGKKA AGGKNPSKGR KSRG
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