| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dtpsy_1147 |
|---|
| Symbol | |
|---|
| ID | 7384579 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax ebreus TPSY |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011992 |
|---|
| Strand | + |
|---|
| Start bp | 1205743 |
|---|
| End bp | 1207053 |
|---|
| Gene Length | 1311 bp |
|---|
| Protein Length | 436 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 643654468 |
|---|
| Product | major facilitator superfamily MFS_1 |
|---|
| Protein accession | YP_002552620 |
|---|
| Protein GI | 222110356 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00900] H+ Antiporter protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.114141 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTCTCCG TCCTAAAGAA CCGCACCTAC CGCCACCTGT TCACCGCGCA GGTGATCGCA
CTCGTCGGCA CAGGCCTGAT GACGGTAGCG CTCGGCCTAC TTGCCTACGA GCTGGCCGGG
GCCGATGCAG GTGCGGTGCT CGGGTCGGCG CTGGCTATCA AGATGCTGGC CTATGTGGGA
GTCGCTCCAG TCGCACAGGC CTTCGCCGAC CAGTTCCCGC GACGGTCATT GCTCGTAGCG
CTGGACCTGG TACGAGCGGT TGTCGCGATC TGTTTGCCCT TTGTCACCGA GGTCTGGCAG
ATCTATCTGC TGATCTTTGT CCTGCAAGCG GCATCCGCCG GCTTCACGCC GACTTTCCAA
GCCACTATCC CGGACATCCT TCCCGATGAA GAGGACTACA CGAAGGCGCT GTCGCTGTCC
CGGCTGGCCT ATGACCTGGA AAGCCTGATT TCCCCGATGC TGGCTGCTGC GCTGCTGACC
GTCATCAGCT TTCACAACCT GTTCGCGGGA ACAGTGCTCG GTTTCCTCGT TTCAGCCGCG
CTCGTGGTCA GCGTGCGGTT GCCCACAACT ATTCCCGGAC CGCGCCGCGG CATTTGGGAT
CGCACGACCC GCGGCACACG CATCTATCTC GCTACGCCAC GCCTGCGGGG CCTGCTGGCG
ATCAGCTTGG CCGTCTCGGC GGCGGGCGCC ATGGTGATCG TGAACACGGT GGTTCTCGTG
AAGGCGCGCT TTGGCCTAGG CGAGGTCGAA GTGGCGTCGG CACTGGCGGC ATTCGGAGGC
GGTTCGATGG TGGCAGCCTT CGTTCTGCCA TCCTTACTGG AAAAGGTGGC CGACCGAACC
GCGATGCTCA CCGGCGCTAC CGTACTGGTC GTGGGCACGG GGATCGGCGC ACTGCTGCCG
AGCTATGCAT TGTTGCTGCC GCTGTGGTTG ATCATCGGCT TTGGCTACAG CGTGGCGCAA
ACGCCATCCG GCCGTCTTCT GCGCCGCTCG GCCCATGCCG AGGACCGTCC TGCGATCTTC
GCGGCACACT TCGCGCTGTC GCACGCCTGT TGGCTCATCT GCTACCCACT TGCCGGCCGC
TTCGGCGCGG TCATGGGCTT GCCATCGACC TTCATTGTCA TGTCCCTGGT CGGCTTGGCC
GGCGTGGCGC TGACGCTCTG GCTGTGGCCG GCCAGCGACC CTTCTGACGT GGCGCATGAC
CACCCCAGCT TGCCGCCGGA TCACCCTCAT TTACGCACAC ACGCAGACCA AGGCAGGCAC
CATCACCAGC TGATTCTGGA TGACCTGCAC CGTATCTGGC CGAAAGGATA G
|
|---|
| Protein sequence | MLSVLKNRTY RHLFTAQVIA LVGTGLMTVA LGLLAYELAG ADAGAVLGSA LAIKMLAYVG
VAPVAQAFAD QFPRRSLLVA LDLVRAVVAI CLPFVTEVWQ IYLLIFVLQA ASAGFTPTFQ
ATIPDILPDE EDYTKALSLS RLAYDLESLI SPMLAAALLT VISFHNLFAG TVLGFLVSAA
LVVSVRLPTT IPGPRRGIWD RTTRGTRIYL ATPRLRGLLA ISLAVSAAGA MVIVNTVVLV
KARFGLGEVE VASALAAFGG GSMVAAFVLP SLLEKVADRT AMLTGATVLV VGTGIGALLP
SYALLLPLWL IIGFGYSVAQ TPSGRLLRRS AHAEDRPAIF AAHFALSHAC WLICYPLAGR
FGAVMGLPST FIVMSLVGLA GVALTLWLWP ASDPSDVAHD HPSLPPDHPH LRTHADQGRH
HHQLILDDLH RIWPKG
|
|---|
| |