Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dtpsy_0646 |
Symbol | |
ID | 7384389 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Acidovorax ebreus TPSY |
Kingdom | Bacteria |
Replicon accession | NC_011992 |
Strand | - |
Start bp | 670114 |
End bp | 672459 |
Gene Length | 2346 bp |
Protein Length | 781 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 643653957 |
Product | general secretion pathway protein D |
Protein accession | YP_002552126 |
Protein GI | 222109862 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1450] Type II secretory pathway, component PulD |
TIGRFAM ID | [TIGR02517] general secretion pathway protein D |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.0255398 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACCAACT TGCCCCGCCA TCCCCTGCGG TTCACTCTTC ATTTGATAGC TGCTAGCGCT TTATTGACGG GCGTTAGCAG CCAAATTCAT GCACAAACCT CCGGGCAGCG CGCCGGCAGT GTGCGGCCCA GCGAGCCGGT GACGCTGAAC TTTGCCAACG CCGACATCGA GGCCGTGGCG CGCACCATGG CCACCATCAC CGGCAAGAAC GTGGTGGTGG ACCCGCGCGT GAAGGGCCAG ATCACGCTGG TGACCGAGAA CGCGGTGCAG CCCAACGCGG CCTTCCAGCA GTTCCTGGCC GCGCTGCGGC TGCAGGGCTT CACGGTGGTC GAGTCAGCGG GCCTGTACAA GGTCGTGCCC GAGGCCGATG CCAAGCTGCA GACCGGCAAC GTGAGCGTGT CCCAGGGCGG CGCGGGCGGC ACGCCCGCGG GCGGGCAGAT CGTCACGCAG ATCTTCAAGC TCAACTTCGA GAACGCGGCC AACCTGGTGC CGGTGCTGCG CCCGCTGATC AGCCCCAACA ACACCATCAA CGTGAACCCC GGCAACAACT CGCTGGTGAT CACCGACTAC GCCGACAACC TGCAGCGCCT GGCGCGCATC GTGGCGGCCA TGGACGTCTC CAACGCCAGC GACGTGGAGG TGATCCCGCT GCAGCACGCC ATCGCCACCG ACCTGGCGCC GCTGGTGTCG CGCCTGATCG AGGGCGGCAG CGCCACTGCC ACAGGCACGG CGCAGGGCGT GGCCCAGGGG CAGACCGACA ATTCGTTCAA GACCACGCTG CTGGCCGAGC CGCGCAGCAA TGCGCTGATC GTGCGCGCTG CCAACCCGGC GCGCGTGGCG CTGGTGCGCT CACTGGTGGC CAAGCTGGAC CAACCAGCCG CGCCGGGCAG CTCCGCTGCC AGCGGCAACA TCCACGTGGT GTACCTGAAG AACGCCGACG CCGTGAAGCT GGCCACCACC CTGCGCGCAG CGCTGGGCAG CGCGGGGGGC AGCGGCACCA GCAGCAGCGG CGGCACGGGA ACCGGCAACC TGTCGGGGGG CCTCACGCGG ACCGGCGCAT CGGGCCTGGG CCAGACCAGC GGCCTGGGCA ACAGCACCAA TGCCAGCGGC AATGCCGGCG GCCTGGGCAG TTCGGGCCTG GGAACGGGCC AGGGCAGCAG CGGCAGCAGC GATGCCAACC AGCCGTCCAC CGGCGGCATC ATCCAGGCCG ACCCGACGAC CAACTCGCTC ATCATCAGCG CGCCGGAGCC GCTGTACCGC CAGATCCGCG CCGTGATCGA CAAGCTGGAT GGTCGCCGCG CGCAGGTACT CATCGAGAGC CTGATCGTGG AGGTGAGCGC CAACAAGGTG GCCGAGTTCG GCATCCAGTG GCAGGGCGTG CTGGGCAATT ACGGCAGCAC GCTGGGCGTG CTGGGCAACA ACTCCAGCGT GGCCGGACGC AACATCCTGG ATCTGGCGCT GGCGGCGGCC ACCGGCAACG TGACCTCCAT CGCCAGTGCC AAGCCGGCCG CCGGCATGAA CCTGGCCGTC GCGCCGCGCA TCAACGGCAA GTACTACCTG GGGGCGCTGG CCAACTTCCT GGAAAACACG GGCGATGCCA ACGTGCTGTC CACCCCCAAC CTGCTCACGC TGGACAACGA GGAGGCGCAG ATCATCATCG GCAACAACGT GCCGTTCGTG ACGGGCTCCT ACGCCAACAC CGGCGGCAGC GGTGGCGCGG TCAACCCGTT CACCACCGTG GAGCGCAAGG ACGTGGGCCT GATGCTGCGC GTGCGCCCAC AGATCAACGA GAACGGCACC GTCAAGCTCA CGATGTACCA GGAGGTCTCC AAGGTCGCGG AGAGCACGCT GTCCAATGCC AACGGCCCCT CCACGAGCAA GCGCTCCATC GAGTCCACGG TGCTGGTGGA TGACGGCAGC GTGATCGTGA TCGGCGGTCT GCTGGAAGAC AACTATGCGC TGAACCAGGA CAAGGTGCCG GTGATGGGCG ACCTGCCCGT GGTGGGCGGG CTGTTCCGCA ATGAAAAGCG CACGCGCCAG AAGACCAACC TGATGGTCTT CCTGCGCCCC ATGGTGATCC GCGACAGCGC CGCCAGCGAC GCGCTGATGG TGGACCGCTA CGAGGCCATC CGCGCGCTGC AGCACAGCAC GCAGCCCGCG CCCAGCACGA TGATGAGCGG TGTGTCCGAG GCGCCGGTGC TGCCGCCCCT GCCCGCCCCC GCCTCGTCCG CCGCGCCCGT GCAGCCCGCG GCCGCAGCTG CGCCGCTGGC GCCGCTCGCA CCCCAGCCGC CCGCGCGCAC CGCCACGCCG CCCAGCATGG GCCAGTCGCC CTACAGCCCG CAGTAA
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Protein sequence | MTNLPRHPLR FTLHLIAASA LLTGVSSQIH AQTSGQRAGS VRPSEPVTLN FANADIEAVA RTMATITGKN VVVDPRVKGQ ITLVTENAVQ PNAAFQQFLA ALRLQGFTVV ESAGLYKVVP EADAKLQTGN VSVSQGGAGG TPAGGQIVTQ IFKLNFENAA NLVPVLRPLI SPNNTINVNP GNNSLVITDY ADNLQRLARI VAAMDVSNAS DVEVIPLQHA IATDLAPLVS RLIEGGSATA TGTAQGVAQG QTDNSFKTTL LAEPRSNALI VRAANPARVA LVRSLVAKLD QPAAPGSSAA SGNIHVVYLK NADAVKLATT LRAALGSAGG SGTSSSGGTG TGNLSGGLTR TGASGLGQTS GLGNSTNASG NAGGLGSSGL GTGQGSSGSS DANQPSTGGI IQADPTTNSL IISAPEPLYR QIRAVIDKLD GRRAQVLIES LIVEVSANKV AEFGIQWQGV LGNYGSTLGV LGNNSSVAGR NILDLALAAA TGNVTSIASA KPAAGMNLAV APRINGKYYL GALANFLENT GDANVLSTPN LLTLDNEEAQ IIIGNNVPFV TGSYANTGGS GGAVNPFTTV ERKDVGLMLR VRPQINENGT VKLTMYQEVS KVAESTLSNA NGPSTSKRSI ESTVLVDDGS VIVIGGLLED NYALNQDKVP VMGDLPVVGG LFRNEKRTRQ KTNLMVFLRP MVIRDSAASD ALMVDRYEAI RALQHSTQPA PSTMMSGVSE APVLPPLPAP ASSAAPVQPA AAAAPLAPLA PQPPARTATP PSMGQSPYSP Q
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