Gene Dtpsy_0420 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDtpsy_0420 
Symbol 
ID7384007 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidovorax ebreus TPSY 
KingdomBacteria 
Replicon accessionNC_011992 
Strand
Start bp425450 
End bp427822 
Gene Length2373 bp 
Protein Length790 aa 
Translation table11 
GC content71% 
IMG OID643653735 
Productdiguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) 
Protein accessionYP_002551904 
Protein GI222109640 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.252746 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCTGCGAT TGTCGCAGCA CGCGAGGCCC CTTCAGGAGT GTGGATTGCT GAGTAAAGGC 
GCGGGCCGCA GGCCCTCGTG GAGGCCCCTG CAGGGCCGCT GGATGTTGGC GCTGGCCGTT
GGTGCCATGG GTGCGGCCTG GGCCTGGGCG GGTGCGGCCG CCTTGCAGTA TCTGCCCCTG
GAGCCGCAGG CGCTGCAGAC CCTGCTGCAG TACAAGAGCG GGCTGGACGC CGTGCTGGCG
GGCGCACTGC TGGGCTGGCT CCTGCTGCGC TGGCGCCGGG GCGGGAGCCG GCGCACCCTG
GCGCGCCGGG TGGAGCAGGT GCTGCGCCAC GCGCCCGCCG GCATGGCGCG GCTGAGCATG
GACGGCCGCC TGGTATGGGC CAACGAACGC CTGCGTGAAT GGCTGGGCGT GGCGCCGCAC
GAGCCGCTAC CCCAGGTCGA CTTTCGCACG CTGGTGCGCC CGCACGACAG CGATTGGGCG
CAGCGGCAAC TGCAGCGGCT GCGCGCCGGC GAGATCGACC ATTACCAGGG CGAGCGCTGG
TGCCGCAACC AGCGCGATGG ATCGCAGCTG CCCGTGCTGT GCACCGTGAG CCATGTGCTG
GCCCTGGAGA GTGAGCCCGA CCACCTGGTG TGCGTACTGC AGTCCCTGCG CGAAGTGCAT
GCCGCGCGCG ACGCGCAGGC GCTCAGCGAG CAGCGCTGGC GCCTGGCGGC CACGGTGGTG
GACAACACCA TCGAAGGCGT GGTGGTCACC GATGCCGACG GCCGCATCCT CTCGGTCAAC
CCGGCCGTCA CGCGGCTCAT GGGCTATACC GAGGAAGAGT TGCTGGGCCA GAACCCGCGT
GTGTTCAAGT CGGGGCGGCA CGGACCGGCG TTCTACGAGG CCATGTGGGA CACCATGCGC
CAGACGGGCC ACTGGCAGGG GGAGATCTGG AACCGGCGCA AGAACGGCGA GGTGTTCCCG
GAGCGCATGT CGCTCTCGGC CGTGCGCGGC GCGGACGGCG CGGTGACGCA CTACGTGTGC
ATGTTCACCG ACATCTCCGA GGAAAAGGCC CAGCACCAGC GCCTGGAGTT TCTGGCGCAC
TGCGACCCGC TGACCGGCCT GCCCAATCGC GCCTGGTTCG GCGAGCAGCT CGACAGCGCC
GTGCGCCAGG CCCAGGACAG CGGCGAGCAG ATGGCCCTGC TGCTCCTGAA CCTGGACCGC
TTCAAGGACG TGAACGACAG CTACGGCCAC GCCGTGGGCG ACGAGGTGCT CAGGCACATC
ACCCGCCAGG TGGAGCAGAG TCTGCGCCCG GGCGATCTGC TGGGGCGGCT GGCCGGCGAC
GAGATCGCCG TGCTGGCCCG CCACCTGCGC CATGCGGACG GCGCGGCAGC CGTGGCGCGG
CACCTGATCG CCGCGGCCAG CACGCCCTGG TGCACGCCCG ATGGCATCCA GGTGGTGGTG
GGCGTGAGCG TGGGCATCTG CATGTTCCCC GCGCATGCGC GGACCACCGA GGCGCTGCTG
CAGGGCGCGC ATTCCTCGGT GTACGGCGCC AAGGCCCGCG GGCGCGGCGC GTATTGCTTC
TTTGACGAAT CGCTCATTCA GGCCGCGCGC GAGCGCCTGG AGATCGAGGC GCGGCTGCGC
GTGGCCCTGG CGCAGGGGCA CCTGCGGCTG TACTACCAAC CGCAGGTATG CATCGTCACC
GGCCGGATCA TGGGGGCCGA GGCGCTGGTG CGCTGGCTGG ACCCGCAGGA GGGCATGATC
TCGCCCGCCC GCTTCATCCC CGTGGCCGAG ACCTCGGGCG TGATCGGCCC GCTGGGCCAG
TGGGTGATGC GCGCCGCCTG CGAGCAGGGC CAGCGCTGGC GCGCCGACGG CCTGCCGGAG
ATCCGCCTGG CCATCAATCT CTCGCCGCGC CAGTTCCAGT TGACCGACGT GGCCGCCTGC
GCCGCCGAGG CGCTCAAGGC CAGCGGCTTC CCGGCCCGCT GCCTGGAGCT GGAACTGACC
GAGTCGGTGC TGGCCGAGCG GCCCGACGAG ATCCGCGCCG TGCTGCAACG CCTGCAGCAG
CTGGGCGTGC GCATGGCGGT GGACGACTTC GGCACCGGCT ATTCGTCCCT GGCGCACCTC
AAGCGCTTTC CCATCGACGT GCTCAAGATC GACCAAGGCT TCATCCGCGA TATTCCCCGC
AGCGCCGACG ACATGGCCAT CAGCGCCGCC ATCGTTGCCA TGGGGCACAG CCTGGGGCTG
TCGGTGCTGG CCGAGGGGGT GGAGACGCCG CAGCAGCTGG CGTTCCTGCG CGAGCGCGGC
TGCGACGCCT ACCAGGGCTA CCTGTGCAGC CGCCCCCTGC CGGCGGAGGA GTTCGCCCGG
CTGCTGCAGG CGCACAACGG CATGGCGGGC TGA
 
Protein sequence
MLRLSQHARP LQECGLLSKG AGRRPSWRPL QGRWMLALAV GAMGAAWAWA GAAALQYLPL 
EPQALQTLLQ YKSGLDAVLA GALLGWLLLR WRRGGSRRTL ARRVEQVLRH APAGMARLSM
DGRLVWANER LREWLGVAPH EPLPQVDFRT LVRPHDSDWA QRQLQRLRAG EIDHYQGERW
CRNQRDGSQL PVLCTVSHVL ALESEPDHLV CVLQSLREVH AARDAQALSE QRWRLAATVV
DNTIEGVVVT DADGRILSVN PAVTRLMGYT EEELLGQNPR VFKSGRHGPA FYEAMWDTMR
QTGHWQGEIW NRRKNGEVFP ERMSLSAVRG ADGAVTHYVC MFTDISEEKA QHQRLEFLAH
CDPLTGLPNR AWFGEQLDSA VRQAQDSGEQ MALLLLNLDR FKDVNDSYGH AVGDEVLRHI
TRQVEQSLRP GDLLGRLAGD EIAVLARHLR HADGAAAVAR HLIAAASTPW CTPDGIQVVV
GVSVGICMFP AHARTTEALL QGAHSSVYGA KARGRGAYCF FDESLIQAAR ERLEIEARLR
VALAQGHLRL YYQPQVCIVT GRIMGAEALV RWLDPQEGMI SPARFIPVAE TSGVIGPLGQ
WVMRAACEQG QRWRADGLPE IRLAINLSPR QFQLTDVAAC AAEALKASGF PARCLELELT
ESVLAERPDE IRAVLQRLQQ LGVRMAVDDF GTGYSSLAHL KRFPIDVLKI DQGFIRDIPR
SADDMAISAA IVAMGHSLGL SVLAEGVETP QQLAFLRERG CDAYQGYLCS RPLPAEEFAR
LLQAHNGMAG