Gene Dtpsy_0388 details

Gene Information

• Locus tag: Dtpsy_0388
• Symbol: rplF
• ID: 7385396
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Acidovorax ebreus TPSY
• Kingdom: Bacteria
• Replicon accession: NC_011992
• Strand: +
• Start bp: 398163
• End bp: 398696
• Gene Length: 534 bp
• Protein Length: 177 aa
• Translation table: 11
• GC content: 59%
• IMG OID: 643653702
• Product: 50S ribosomal protein L6
• Protein accession: YP_002551872
• Protein GI: 222109608
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0097] Ribosomal protein L6P/L9E
• TIGRFAM ID: [TIGR03654] ribosomal protein L6, bacterial type

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.0000757352
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCCCGTG TAGGTAAATC CCCGGTAAGC ATCCCCGCAG GCGTGGATGT GTCCATCAAG 
GACGACCAGA TCAGTGTCAA GGGTGCTGGC GGCGTGCTGT CGCTGGCGCA GAACGCGCTG 
GTGAAGGTGT CTAACAACGA AGGCAAGCTG AGCTTTGAGC CGGTCAACGA CTCGCGTGAA 
GCCAATGCCA TGAGCGGCAC CGTGCGCCAG TTGGTGAACA ACATGGTGGT CGGTGTGAGC 
AAGGGCTTTG AGAAGAAGTT GACGCTGATC GGCGTGGGCT TCAAGGCAGC AGCCTCCGGC 
AACAAGCTGA ATCTGGCCAT CGGTTTTTCG CATCCCGTGA ACTTCGAGAT GCCCACCGGC 
ATCACCGTTG CCACGCCGAC GCCCACCGAA ATCGTGATCA AGGGTGCTGA CCGCCAAGTG 
GTGGGCCAGC TGGCCGCCGA GATCCGTGCC GTTCGTCCGC CCGAGCCCTA TAAGGGCAAG 
GGTATCCGCT ACGCGGACGA AAAAGTCACG ATCAAAGAGA CCAAGAAGAA GTAA 

 

Protein sequence

MSRVGKSPVS IPAGVDVSIK DDQISVKGAG GVLSLAQNAL VKVSNNEGKL SFEPVNDSRE 
ANAMSGTVRQ LVNNMVVGVS KGFEKKLTLI GVGFKAAASG NKLNLAIGFS HPVNFEMPTG 
ITVATPTPTE IVIKGADRQV VGQLAAEIRA VRPPEPYKGK GIRYADEKVT IKETKKK