| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_9661 |
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| Symbol | trbB |
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| ID | 7381873 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011991 |
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| Strand | - |
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| Start bp | 126684 |
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| End bp | 127646 |
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| Gene Length | 963 bp |
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| Protein Length | 320 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 643653316 |
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| Product | conjugal transfer protein TrbB |
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| Protein accession | YP_002551487 |
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| Protein GI | 222109222 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4962] Flp pilus assembly protein, ATPase CpaF |
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| TIGRFAM ID | [TIGR02782] P-type conjugative transfer ATPase TrbB |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | GTGCATCCAA GTCGCTCTGG TGAATCCGAA AGGCGGTTGA TCGCCAATCT CCGAGACGCC
CTTGGCGATG TCATTGTTGC GGCCCTGAAT GACTTGGCTG TGGTCGAGGT CATGCTCAAT
CCGGACGGCA AGTTGTTTGT CGAGCGTATC GGAGAAGGCA TCAGACCTGC CGGGGACATG
AATGCCCATG ACGCAGAGGC CGTGATTGGC CGCGTGGCCC ACGCACTCAG CACCGAGATC
AACCGCGAGC GACCCATCAT CTCGGGCGAA CTTCCGCTTG GAGGACATCG GTTTGAGGGA
CTTTTACCAC CCGCCGCGCC GGCGCCGATG TTCACCATCC GCAAGCGAGC ATCGGTCCTG
ATATCGCTCG ATCGCTATGT GGAGGATGGC ATTCTCACCA CGGCGCAGGT CGCCGTCATC
CGAGACGCCA TTGTCCAGCG TCTGAACATC GTGGTCTCTG GTGGCACGGG GACCGGCAAG
ACCACACTGA CGAACGCAAT TCTTCGCGAA TTTGTCGATG TTACGCCCGA ACATCGTTTA
GTCATCCTCG AAGACACGGC CGAGATCCAG TGCGCGGCGA AGAACTACGT TATCCTGCAC
ACCACTGATA CCGTCGATAT GAACCGCCTC TTGAAGTCGA CAATGCGCTT GCGGCCGGAT
CGCATCATCG TTGGCGAGGT TCGTGATGGT GCAGCACTTA CGCTCCTCAA AGCATGGAAC
ACCGGACATC CGGGCGGTAT CGCGACGGTA CATGCGAACA ATGCCAAAGC CGCCCTTACC
CGTCTCGAAC AGCTCGTCGC GGAAGTGAGT TCCCAGCCTA TGCCCGAAGT CATCGGGGAA
GCGGTCGATC TGATCGTCTC CATTGAACGC ACCCCCAAAG GGCGCATCGT GCGCGAGATA
CTCAGGGTCG ATGGGTTCCG GAACGGCACT TATCAAATCA CCCCGGTTGG TAACCAACTC
TGA
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| Protein sequence | MHPSRSGESE RRLIANLRDA LGDVIVAALN DLAVVEVMLN PDGKLFVERI GEGIRPAGDM
NAHDAEAVIG RVAHALSTEI NRERPIISGE LPLGGHRFEG LLPPAAPAPM FTIRKRASVL
ISLDRYVEDG ILTTAQVAVI RDAIVQRLNI VVSGGTGTGK TTLTNAILRE FVDVTPEHRL
VILEDTAEIQ CAAKNYVILH TTDTVDMNRL LKSTMRLRPD RIIVGEVRDG AALTLLKAWN
TGHPGGIATV HANNAKAALT RLEQLVAEVS SQPMPEVIGE AVDLIVSIER TPKGRIVREI
LRVDGFRNGT YQITPVGNQL
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