| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_9659 |
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| Symbol | trbC |
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| ID | 7381872 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011991 |
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| Strand | - |
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| Start bp | 126301 |
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| End bp | 126666 |
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| Gene Length | 366 bp |
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| Protein Length | 121 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 643653315 |
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| Product | conjugal transfer protein |
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| Protein accession | YP_002551486 |
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| Protein GI | 222109221 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3838] Type IV secretory pathway, VirB2 components (pilins) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGTCGCGTA GAATGTTTAC GTTGGTCGCC CTTGCGGCCA TCTCGATGAT GATGGCCGAA
CCGGCCTTTG CTGCCGGGGG AGGGGGTGGT CTGCCCTGGG AGGGACCGCT TCAACAGATC
CAGCAGTCCA TCACCGGCCC CGTCGCCATG GCAATCGCCC TGATCGCAGT CGCGGTCGCA
GGTGGCATGC TCATCTTTGG TGGCGAGATC AACGACTTCG CGCGTCGTCT CGCCTACGTC
GTTCTTGTCT GCGGTATCCT TCTTGGCGCG ACACAGGTTG TCGGCCTGTT CGGCGGGGGA
GGGGCGTCGA TTGGCGTTCC TCTCGAGGCA ACGCAGGACG TGACGCTGGA CAGGGCGCAT
GGCTGA
|
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| Protein sequence | MSRRMFTLVA LAAISMMMAE PAFAAGGGGG LPWEGPLQQI QQSITGPVAM AIALIAVAVA
GGMLIFGGEI NDFARRLAYV VLVCGILLGA TQVVGLFGGG GASIGVPLEA TQDVTLDRAH
G
|
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