Gene Avi_9651 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_9651 
SymboltrbF 
ID7381867 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011991 
Strand- 
Start bp120719 
End bp121384 
Gene Length666 bp 
Protein Length221 aa 
Translation table11 
GC content59% 
IMG OID643653310 
Productconjugal transfer protein TrbF 
Protein accessionYP_002551481 
Protein GI222109216 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG3701] Type IV secretory pathway, TrbF components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.39699 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCCAAAA AGCTGAAGCA TTTCGACAAC CCGTATCTGG CGGCGCGTCA CGAATGGAAT 
GAGCGCATGG GCGGCGCCAA CCGCGCAGCC AGAGCATGGA TGACCGTCGG ATCGGTTTCG 
CTGGTGATGG CGACGGTGGG TTTCGGCTTC GCGCTCTATC AGGCCAGCCA GGTCAAGCTT 
GTCCCCTATA TCGTGCAGGT CGACACGCTC GGAAATTCTG TTACGGGCGG GTTCCCGGCA 
CAGATCGAAT ATGCCGACGA GCGCGTCGTT CGCAACATGC TCGGCCAGTT CGTTTATAAC 
TTCCGATCGA TCACGCCGGA TAATGTGGTC CAGAAGGGCT ATATCGACCG CACCTATGCG 
ATGCTTCGGC GCACTGACCC CTCCACGGAA AAGGTCAACA ACTGGTTCCG GAATAACTCG 
CCCTTCGATC GCGCCCGGAC AGTGACGGTG TCCGTCGAGA TCAACAACAT CGTGGCCCTC 
TCCAACCAGT CGTACCAGAT CGACTGGACT GAGATCGAGC GCGATCGGGC GGGCAAGGAA 
CTGCGGACCC GGCGATGGCG CGGGATCGCC ACCGTGACCC TGTCGCCGCC CCAGGACGAA 
GCTATCATTC GCCTCAACCC GATCGGTCTT TACCTCAAGG ACTTCGATTG GACGGCCCAA 
CTTTAA
 
Protein sequence
MAKKLKHFDN PYLAARHEWN ERMGGANRAA RAWMTVGSVS LVMATVGFGF ALYQASQVKL 
VPYIVQVDTL GNSVTGGFPA QIEYADERVV RNMLGQFVYN FRSITPDNVV QKGYIDRTYA 
MLRRTDPSTE KVNNWFRNNS PFDRARTVTV SVEINNIVAL SNQSYQIDWT EIERDRAGKE 
LRTRRWRGIA TVTLSPPQDE AIIRLNPIGL YLKDFDWTAQ L