Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_9650 |
Symbol | trbG |
ID | 7381866 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011991 |
Strand | - |
Start bp | 119879 |
End bp | 120700 |
Gene Length | 822 bp |
Protein Length | 273 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 643653309 |
Product | conjugal transfer protein TrbG |
Protein accession | YP_002551480 |
Protein GI | 222109215 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3504] Type IV secretory pathway, VirB9 components |
TIGRFAM ID | [TIGR02775] P-type conjugative transfer protein TrbG |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.0266012 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTTCAAAT TGACGAAATT GCGTGCGAGC GTTGTGACCG CACTGGTCCT TTTGACTGCC GCGCCCACCC TGGGCGGTGC TGCCGACTAC AACGCAAGCA AGGGCACCCG GCTTTCAGGC CAATGGCAGG ACGCCGGCGC TGTCATGACA CGCGGACCTG ACGGACAGGT CATCTATCTG TTTGGCGAAA CGCAGCCGAC CGTCGTCTGC GCACCCTTGC AGCTTTGTGA GGTGCAGCTG CAGCCCGGAG AGGCCGTGCG CGATGTTCTC GTCGGTGACA CTGTTCGATG GCAGGTTGAG CCCGCGTCGT CTGGTTCGCC GCAGGGACAG CGTATCAGCC TGATCGTCAA GCCTGCCGAA GCCGGTTTGA AGACTTCGAT GGTCATTACG ACGTCACGCC GGACCTATCA TATCAATCTG CAGTCCGACG GCACACGCTA TATGGCGCGC GTCGCCTTCA AATACCCCGA AGACGTTCGC CAGCAGCTAG CGGCGGTAAA CCAGAAGATC TCGGATAGCA TCATTCCGGG TGCTGGCATT CCAGCCGAAA ACCTCCGTTT TGATTTTTCC ATGCGCGGCT CCGCCCGCTG GAAACCAACC CGGATCTATA CCGACGGGAC GAAGACGTAC ATTCAGTTCC CCGGCCAAAT GAGAAGTGGC GATGCCCCAG TCCTCTATGT CGTGTCCGGA GGACAGAACC AGATCGTCAA CTACCGACTG AACAACAACA TGATGGTGGT CGATTATCTA ATCGATCGGG CCGTTCTGAT TTCGGGCGTC GGTCGGCAGC AGCAGAAAAT CACCATCAGC AGGAGGGGTT AA
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Protein sequence | MFKLTKLRAS VVTALVLLTA APTLGGAADY NASKGTRLSG QWQDAGAVMT RGPDGQVIYL FGETQPTVVC APLQLCEVQL QPGEAVRDVL VGDTVRWQVE PASSGSPQGQ RISLIVKPAE AGLKTSMVIT TSRRTYHINL QSDGTRYMAR VAFKYPEDVR QQLAAVNQKI SDSIIPGAGI PAENLRFDFS MRGSARWKPT RIYTDGTKTY IQFPGQMRSG DAPVLYVVSG GQNQIVNYRL NNNMMVVDYL IDRAVLISGV GRQQQKITIS RRG
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