| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_9648 |
|---|
| Symbol | trbH |
|---|
| ID | 7381865 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011991 |
|---|
| Strand | - |
|---|
| Start bp | 119420 |
|---|
| End bp | 119875 |
|---|
| Gene Length | 456 bp |
|---|
| Protein Length | 151 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 643653308 |
|---|
| Product | conjugal transfer protein TrbH |
|---|
| Protein accession | YP_002551479 |
|---|
| Protein GI | 222109214 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.0225074 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAGGGAA ACTCCACACT CGTACGCGTT CTCGCGATCG GTATCGTTTC TGCCTCGCTT
GCGGCCTGCA CGACGTCGGG CGGCTATTTC TCCCCTCAAA CCAGCATGGA TGCCGCTAAT
CTCCAGGCGC CGGCCGCCGA TGCTGTTGCC GCCGACATGG TTGCCCGGCT TGCCGAACAC
GTCGGTCCGG GAACCGGTAC CATTGTTCTC AAGACTGACA ACACCGCATT CGCATCTGCG
TTTGAGAAGC ATTTGCGTGA ATGGGGCTAC GCGGTCGATG CGACCGCGAC CGGCCCCAAA
GCTATCGCGC TTGCCTATAC CGTGGATTCG CTGGATGGCG ACGTGATCGC GCGGGTTTCG
ACGCCGGGCG TCGAACTGGC CCGTCAATAT CAGGCGACGA AGACAGGTGC AGTGGCCTCA
AGCCCGCTTT CGGTCATGAA GCACGGCGAA ACGTAA
|
|---|
| Protein sequence | MQGNSTLVRV LAIGIVSASL AACTTSGGYF SPQTSMDAAN LQAPAADAVA ADMVARLAEH
VGPGTGTIVL KTDNTAFASA FEKHLREWGY AVDATATGPK AIALAYTVDS LDGDVIARVS
TPGVELARQY QATKTGAVAS SPLSVMKHGE T
|
|---|
| |