Gene Avi_9589 details

Gene Information

• Locus tag: Avi_9589
• Symbol: traG
• ID: 7381936
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011991
• Strand: -
• Start bp: 62749
• End bp: 64638
• Gene Length: 1890 bp
• Protein Length: 629 aa
• Translation table: 11
• GC content: 58%
• IMG OID: 643653271
• Product: conjugal transfer coupling protein TraG
• Protein accession: YP_002551442
• Protein GI: 222109177
• COG category: [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG3505] Type IV secretory pathway, VirD4 components
• TIGRFAM ID: [TIGR02767] Ti-type conjugative transfer system protien TraG

Plasmid Coverage information

• Num covering plasmid clones: 6
• Plasmid unclonability p-value: 0.283815
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAAGGGA TTGAATTCTG GCTGGCCGGT TTCGGCACCA GCCCGCAAGC CTACCAGGCA 
CTGGGACGCG TCGGCCTGAC CGTTCCCTAT GCGACGGCAG CTCTGGTCGG CGTCATCTTT 
TTGTTCAGCA CCAGAGGCTC TCTCCTGATC CAGTGGGCAG GATGGGGGGT GCTGATCGGT 
GGTTTTTTGT CGATGGCACT GGGTGTTGGT GGTGAGGGAT TTCGGCTGAT CGCAATTCGA 
TCCAGCCAGC CAAATGCTCT TCTTTTGCCT CTGGTCGACT GGTTTACGAT CGCCGGAGCC 
ACAGCCTGCT TCTTTATCGC GATCTTCGGT TTAAAGGTCG GGCAGCGTGG CAACATGGCG 
TTCGGCCGGA CGGGTCCGAA GCGCCTGAAA GGCACAAGGG CTGTCCATGG TGCAAACGAC 
TGGATGAGCC TGTCTCACGC CGCAAAGCTT TTCCCGCCGA TCGGCGGGAT TGTCGTTGGA 
GAAAATTACC GGCCTGACCA AGATAGTATC GGTCAGGTTG GTTTCGATCC TCGTCGAAAG 
GAGACCTGGG GCAAAGGCGG CAAAGCGCCC CTCCTTGGTT TCGACGCCGG ATTTGGATCC 
ACGCATGGCC TCGTGTTCGC CGGCTCTGGC GGCTTCAAAA CCACGTCCGT TGTCATTCCC 
ACGGCACTCA CGTTCAAAGG GTCCATGATC GTGCTTGATC CATCGACCGA GATCGCGCCG 
ATGGTCAGCG AGCATCGGAC CAGAAACCAT CAGGAGGTCG TGTCGCTCGA TCCGAGGTTG 
CCGCATATCG GTTTCAATGT GCTCGACTGG ATCGGCAAAC ACGGCAATAC GCCGGAAGAG 
GATATCGCCT CGGTGGCCGC GTGGCTGATG AGCGAAAAGC CGCGCGTCAG TTCCGGGTCG 
GACGACTTTT TCCGAACCAC CGCCGAGCAG CTCATCGCGG CGGTTATCGC CGACGTTATG 
CTGACCGATC TCGATGAGAT CGAAGACGAC CCGGACGAAG ATCCCGAATT CAAGACGGGC 
GAAAAGTCGC TGCGCATGGT GCGCAAGCGG CTCGCCCAGC CTGAAAAGAC GCTGCAGAAG 
AAGCTCGAAA AGATTCACAA GAACACGTCG TCGCGGTTCG TGCGAGAGAA TGTAGCGCCC 
TTCATCAACA TGACCGAGCA GACGTTTTCC GGCGTCTATG CGACGGCCAC CAAGGAAACC 
CACTGGCTGT CATACGAAAA CTACGCGGCT GTCGTTTCCG GGAGATCCTT TCATACGGAA 
GACATTGCCT CTGGCAACAT GACGGTGTTT ATCAACATCG ATCTATCGAC CCTCGAAAAT 
CATCCCGGCA TGGCCCGCGT GATAATTGGA GCGTTCCTGA AGGCGCTCTA TAATCGCAAC 
GGCGATGTCT CAGAACGCGC CCTCTTCCTT CTCGATGAGG CGGCACGTCT GGGGTATATG 
CGCATCATCG AAACCGCCCG CGATGCTGGT CGCAAATACG GCATCACCTT GCTGATGCTG 
TTCCAGTCGC TAGGACAAAT GCGGGAAGCG TTCGGCGGTC GCGACGCGAC CAGCAAATGG 
TTCGAGTCCG CGTCCTGGGT ATCGTTTTCG GCGGTGAACG ATACCGATAC CGCGGATTAC 
ATTTCCAGGC GTTGCGGCAC GACGACCATC GAGGTCGATC AGGTGACGCG CAATTCCAAC 
GGTGGGCGCA ACGGACGCAC CCGTTCCAAA CAGATCTCGC AGCGGCCGTT GATATTGCCC 
TACGAGGTCA TGCAGATGCG GACCGACGAG CAGATCATTT TCACGAGCGG TAACCCGCCG 
CTGCGCTGCG GGCGCGCTAT CTATTTCCGC CGTGAGGAAA TGGCATCGAG GGTGGGACCA 
TCGAACTTTG CGCCGAAAGC GGCCGGCTGA 

 

Protein sequence

MKGIEFWLAG FGTSPQAYQA LGRVGLTVPY ATAALVGVIF LFSTRGSLLI QWAGWGVLIG 
GFLSMALGVG GEGFRLIAIR SSQPNALLLP LVDWFTIAGA TACFFIAIFG LKVGQRGNMA 
FGRTGPKRLK GTRAVHGAND WMSLSHAAKL FPPIGGIVVG ENYRPDQDSI GQVGFDPRRK 
ETWGKGGKAP LLGFDAGFGS THGLVFAGSG GFKTTSVVIP TALTFKGSMI VLDPSTEIAP 
MVSEHRTRNH QEVVSLDPRL PHIGFNVLDW IGKHGNTPEE DIASVAAWLM SEKPRVSSGS 
DDFFRTTAEQ LIAAVIADVM LTDLDEIEDD PDEDPEFKTG EKSLRMVRKR LAQPEKTLQK 
KLEKIHKNTS SRFVRENVAP FINMTEQTFS GVYATATKET HWLSYENYAA VVSGRSFHTE 
DIASGNMTVF INIDLSTLEN HPGMARVIIG AFLKALYNRN GDVSERALFL LDEAARLGYM 
RIIETARDAG RKYGITLLML FQSLGQMREA FGGRDATSKW FESASWVSFS AVNDTDTADY 
ISRRCGTTTI EVDQVTRNSN GGRNGRTRSK QISQRPLILP YEVMQMRTDE QIIFTSGNPP 
LRCGRAIYFR REEMASRVGP SNFAPKAAG