Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_9532 |
Symbol | pbpB2 |
ID | 7381902 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011991 |
Strand | - |
Start bp | 33816 |
End bp | 35573 |
Gene Length | 1758 bp |
Protein Length | 585 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 643653238 |
Product | penicillin-binding protein |
Protein accession | YP_002551409 |
Protein GI | 222109144 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0768] Cell division protein FtsI/penicillin-binding protein 2 |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.110863 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGTCGTTTC TTTCTCGTAT CATCACCATT AGAACAAAGG CGCATTTTTC GTCGGTTGCG CGTCGTCGAT CAGCATCATT CGGTCCTGGG AAGCATAAAG GTAATGAAGC GAGACAACGC ATCCTTGTTC TGATGGGGGG GTTCTGCGTT CTCTATACGG TGATTGGCGC ACGACTTGTC CAATATGGCA CTGCATCGCC CCTGGTCACG AGTTCGATCA GTGCTCCTGG GTTTGGCATT GCTTCACGCC CGGATATCGT GGACCGGAAC GGCGAACTCC TTGCCACGGA CCTCAATATG GTGTCACTTT ATGCGGAACC AAGGAAGATC GTTGACATTG ACGAAGCCGT GGAGAAGCTA TCGACCGTCA TCAAGGGGAT CGACTGGGCC GATACCTACA AAAAGCTGCA ATCCAAATCA GCGTTCCAGT GGCTCCGCCG CCGACTGACG CCGCGCCAGC AAGCAGATAT CCTCGCGCTC GGCATCCCTG GTATTGGGTT CCGTCCCGAG AAACAGCGTT TCTATCCGGG CGGCGCAACG GCAGCCCATA TCCTTGGACA CGTCAACATC GACAATAAGG GGCTCGCAGG GATGGAGCGC TATATCGATC AGCAAGGACT TGCTGATCTG CGTGCCGCAG GCCTGACCGA CAACGCCCAC CTCGATCCTG TGCGGCTGTC CATCGATCTA AGGGTGCAGA ACATCGTCCA TGACGTGATC GCCGAGGCAA TGATCAACTA CAAAGCTGAA GCCGCTGGGG CTGTTGTGCT AGACGCCGAG ACGGGGGAAA TCCTCGCCAT GGCATCAGTC CCCGACTACA ATCCAAACGA ACCGTCTAGA ACCCTCCCTG ACGGCTCTGT CGATAAAGAG TATGAAAAAG GCTGGTTCAA CCGGATGAGC AACGCGACCT ACGAAATGGG ATCGACGTTC AAAAGCTTCA CGCTTGCGAT GGGGTTGGAC GAGGGGAAAA TCGGGCTTAA TTCTGTCTTG GATGCTTCGA GGCCAATCAA AATGGGCGGT TTTACCATTC ATGATGACCA TGGTCAGGGA CGCCCTCTCA CTGTCCCGGA GGTCTTCCAA TATTCATCAA ATATCGGAAC TGCCAAGATT GCGACAATGG TGAATCTTAA AGACCATCAG GCCTTCCTGA CCAAGCTGGG CCTTCTGTCG AAGATGACGA CTGAACTGCC CGAAGTTGCC ACCCCCACTC AGCCACGTGT CTGGAAGCCG CTCAATCAAG TGACGATATC CTTCGGCCAT GGCGTTGCAA CCACACCGCT GCAAACCGCC GTAGCAGGGG CGGCCCTTAT TAACGGTGGA AAGCTCTTTT CACCGACCTT CCTGGCCAGA AGCCCTGATG AGGCCGATGT CGTGGTGAAG CAGGTCATTC AGCCGAAGAC CAGTGCAGAC ATGCGATACC TCTTCCACTG GAACGGGATC AAAGGTTCCG GCAGGAACGC ACAGGTCCAG GGGTTCAACG TTGGGGGCAA AACGGGTACC GCCGACAAGG TTATTAACGG TAAATACGCG GCGCACCTGA ACTTCAACGC CTATCTGGCC GGATTCCCAA TTGACAAGCC TAGATACGTT GTGTTGACCG TCATCGACGC ACCATTAACC GGGGAAAAGG GAGGTAGGCT AGCTGCGTAC ACCGCTGCCC CGATGGCGAA GGAAGTCATA AGCAGATCGG CAGCCCTTCT TGGTGTACAG CCTCGCTTCG GGAACGATGA CGATCCGCAG TTACTAACTA ACTACTGA
|
Protein sequence | MSFLSRIITI RTKAHFSSVA RRRSASFGPG KHKGNEARQR ILVLMGGFCV LYTVIGARLV QYGTASPLVT SSISAPGFGI ASRPDIVDRN GELLATDLNM VSLYAEPRKI VDIDEAVEKL STVIKGIDWA DTYKKLQSKS AFQWLRRRLT PRQQADILAL GIPGIGFRPE KQRFYPGGAT AAHILGHVNI DNKGLAGMER YIDQQGLADL RAAGLTDNAH LDPVRLSIDL RVQNIVHDVI AEAMINYKAE AAGAVVLDAE TGEILAMASV PDYNPNEPSR TLPDGSVDKE YEKGWFNRMS NATYEMGSTF KSFTLAMGLD EGKIGLNSVL DASRPIKMGG FTIHDDHGQG RPLTVPEVFQ YSSNIGTAKI ATMVNLKDHQ AFLTKLGLLS KMTTELPEVA TPTQPRVWKP LNQVTISFGH GVATTPLQTA VAGAALINGG KLFSPTFLAR SPDEADVVVK QVIQPKTSAD MRYLFHWNGI KGSGRNAQVQ GFNVGGKTGT ADKVINGKYA AHLNFNAYLA GFPIDKPRYV VLTVIDAPLT GEKGGRLAAY TAAPMAKEVI SRSAALLGVQ PRFGNDDDPQ LLTNY
|
| |