| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_9531 |
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| Symbol | |
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| ID | 7381901 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011991 |
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| Strand | - |
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| Start bp | 29843 |
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| End bp | 33256 |
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| Gene Length | 3414 bp |
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| Protein Length | 1137 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 643653237 |
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| Product | helicase ATP-binding protein |
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| Protein accession | YP_002551408 |
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| Protein GI | 222109143 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1112] Superfamily I DNA and RNA helicases and helicase subunits |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.964957 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCAAAGT CCGCACGAGC CGCTAAACCG ACCCTTGATT CCAGATTCAG GTTCGCGGAA
GCGTCGTTTC ACGGCGCACC GGGAGGATGG ACATCTCTGC TCACACCCGC CACGGGCATC
GAGGATGGCG AGCAATATCT GCTACGGCTA TTTAAGAAAA CTGGGTCGGC AATTGACACC
GACCTGAAAA ATTTGATCGG CCGAGGCTTG AGACGCATTC GCCGTGTCCT GTCTTCGAGG
CAGGCGCAAG AAGTCCTGGT CTCTGTAATT GAGGTTGTCG AGGACGACGA CGAGATTGGC
ATTTTGATGC TCGATCCGGG CAGTCCTCTC CGCGGAAATG CGCAAGGTAA TCGAGGCCGC
CAGGGCCAAT ACCTGGTCAG TTCCGGCCGA CTTGTCTTCT GGCGGAACAT GGTCCGGGTT
GCACGGGGCC TTGCATATTG CCACGATGCC GGCATCGTGC ACGGTTCGGT CAGCGTTCAC
ACCATTTTTT CGCATGGGGA CGATCGGGAA GACTACCGCC TTGGCGGTTA CGAGACCTGC
GTGCACATCG CGGATTCTGG GCTTGCCGGC GCAGGGAACC CGGGGCAGCC ACCCCACGCA
ATTTCATTCC GACAGGACTG GGCTGACCTC GGGCGTACTG CATCTGATCT GTTAGGTGTT
GATGCCGCGC AGTCGCCTGC CCTACTGTCC ATCGAGCGAC GCATTCTCGA AAGACTAAAA
AATCCGCCGC AATTCCAGCT GTACGACGGC CGAGCTGTTC TTAGGGAATT AGGCGAGGTT
GTGGAAGAAT TAGAGAAGGT CGGCTCAAGC GCTGATGCCG AACTGGTGCT CCACCCGTCG
AGGCAAGCAC TGCAGAGCGA TTTGGCGGCG CTGACGTCGG GAGCGATCCC GGCCAGCGAC
GTCGAAGCAG TACTGGCCTT TGTCGAGCGC GATCTGCATG CTCCGACCAC ACGACTGGCC
GTATCGGATC GCGGGATCGT TCGGATCGTG ACAGATCTCG CGATTTACAT GATCGAAATT
GATGACCCGA AAATCGGCAG CATCCGGGAC GCTCACAGGC GGCGACCGGG TGACTGGAGC
GTCTACGATG CTAGCGATCT TACTCACCGC ATACATCTTG CCCGTAATCG TAGCGGCTCG
GATGACCGGG TCCGGTGGCT GGGGCCAGCT GCCAAAAATT GGACAGAATT ATGCGGGCAG
GGCGTCAAAG CAGTTGCCAC CAACGACAGT CCTATTTGGT ACGCACTTAT CCTGCTCGAA
GCATTCTCGC TGTTACGAGA ACAGTTCAGG TTTTACCCTA TCGAAGTGCT GACGGGAGTT
AAGAACGACA GAGGGGTGGT CTGGGTGGTT CCCGTGGCAG ATCCCGACCT CGACGATAGA
CGGGCGAACG CGGGGTTCAA GCCCGCCGCC GAGTCCATGG CCAGGGAACT GTCCAATGAC
GACGGGCGCG CAAACTGGAC ATTCTCACGG TCGGACACCC TTGGGAGCGA TAGGGAACGA
GCACCCCAAT TGAACTTCGA GGGCACTGAG GTCGTCGGGG GCAAGAAGGC CTATGCGTTC
ACCACAGGAG ACGCCCTCGT TCCGGACTAC TGTTATTTGC GTCCCCGCCG CGATAGCGGC
TTCGAGCGAG CCGTTCGCCG TCGCCTGCAG AATATAGTCG CTGCACGGAG CAATGTGGAA
CTTTTACGCG CACTTGACGA TCCGGCGCAG GTGTTGATGG ATGATGCGCT CAGGGAAATC
GCCACACCTG GTCCCGTTCC GGCAGGCATG GATCAGTCGA AAGCGGCCGC CTGGGATGCA
ATTCGAGAGG GCCAGCCCAT TAATATAGTC GTAGGGCCGC CTGGGGTCGG CAAAACCTAC
CTTATCTCCA ATCTTGTAAA AAGCATTCTT TCCTTGGCAC CGGATGCCCG TATTCTGATT
GCCGCTCAGA ACCACGACAC ACTTGTCCAC ATGGAGGAGG AGCTAGAGAA GGAGTTGCGA
GGGCGCTCTC ACATCGTTGT CAGGATCGAA CGAACGCAGA CCGACGAAAA AGATAGCGTC
ATGAGGGGAC GCTCACGGGA TCTCCTTCGA TTGGCGTCTC CGCAGGGCAG CGCGGCCCTG
ATGTCCAGCC AAATCAGGCA GATAAAACAC GCGCTCAATC CCGTTGATGC TGGGGAGCAG
GCGGCCGGGG ATCGCGTTCA CCGCGACACG GAAAACCTTT TGGTGAGATC GTCTGATATC
ACCTTAGCGA CGACCTCCTC GTATGTCATC GAGGAGATGA TTGCCGATGG TGATCAGTTC
GATTGGACGA TCGTCGAGGA GGCGGCCAGA GCCAATGGCG CCGAAATGAT CGGCGCTCTC
CTGCTGGGAA ATCGCCGGCT GCTGATTGGC GATCATAAGC AGTTGTCACC GTTCGATCAT
CTCGAGCGCA AAAAAATGTA CGACGGGGCA CGCGCTGCGG AGCTGCTGCG CGACGCGAGG
ACCAAGCTCG GCGCAATCAA CGACCTACCT TCCGAGGTAG ACGAAGCGCT TCAACATATA
GGTGATGATC GAGACTTGTT GCACGATGTT TTGGCCATCT CCGCTCGCAT GGAAGAACCC
TTTGCTTCCA TCGCGTTGCG CGAGGGCGAG AGAGAAAAAA TAACGGGGCG CGTCAGCCGT
TTCGTGAACA CGCTGCTTGA GCAAAGCAGA ATGCATCCCG CAATTTGTCA GGTGGTCTCC
AATACGTTCT ACGGCGGCGA GCTCATTCCT TCGGATAGGG CTGTACAACG CATGCCCGCC
GTCGTCTCTC ATGGCGTCCT TCCCAACTCT CCCGTTGTCG TCATGAACCT GCCCCCGTTA
AGCAAGGTCG ATCGTCCTGC ATTCGAGACG CGGGTGGGTC GATCCCTACG CAACGATGTC
GAAGCAACAG TCCTTCTCGA CGCGCTTAAG CAATTACGGC CTATCGTAGC GGACGATGGC
CGGCTGCCGA CACTGGCGGT CCTCTCACCA TACAAAGCCC AGGTTGACCA TCTTAAGCGG
TCGATCGGCA GGCAAATAAA ACAGCCCGCC GGCACGCTAC AGGGTTTCGC GAGTCCGAGG
GCCGACGGAA ACTTTGTATT CACCAGCGAC AGCTTTCAAG GCAGCGAAGC GGACGTCGTA
CTCGCAAGCC TGGTGCGCAA CAACCAACTC GTAGGTTCGC GCGCATTGGG TTTCATGCGA
AACCCTCAAA GGGTGAACGT GCTGATGAGC CGCGCCCGGC ACAAGCTGAT TATCGTATCA
AGCCTCGATT TTGTCGAAGA TGCTGTCGAC GGCGTTGACC CTGACCGGTT GGGAGGCGAG
CTAGGATTTC TCATAACGAT GGTCGGCGAA CTGCGCAGGC TGTCGTTGAT AAGCGACACC
GAGCAAAGTG CGCGCATCGT CGATCTCGAT TCAAATGGTG CGGTGAAGCT GTGA
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| Protein sequence | MSKSARAAKP TLDSRFRFAE ASFHGAPGGW TSLLTPATGI EDGEQYLLRL FKKTGSAIDT
DLKNLIGRGL RRIRRVLSSR QAQEVLVSVI EVVEDDDEIG ILMLDPGSPL RGNAQGNRGR
QGQYLVSSGR LVFWRNMVRV ARGLAYCHDA GIVHGSVSVH TIFSHGDDRE DYRLGGYETC
VHIADSGLAG AGNPGQPPHA ISFRQDWADL GRTASDLLGV DAAQSPALLS IERRILERLK
NPPQFQLYDG RAVLRELGEV VEELEKVGSS ADAELVLHPS RQALQSDLAA LTSGAIPASD
VEAVLAFVER DLHAPTTRLA VSDRGIVRIV TDLAIYMIEI DDPKIGSIRD AHRRRPGDWS
VYDASDLTHR IHLARNRSGS DDRVRWLGPA AKNWTELCGQ GVKAVATNDS PIWYALILLE
AFSLLREQFR FYPIEVLTGV KNDRGVVWVV PVADPDLDDR RANAGFKPAA ESMARELSND
DGRANWTFSR SDTLGSDRER APQLNFEGTE VVGGKKAYAF TTGDALVPDY CYLRPRRDSG
FERAVRRRLQ NIVAARSNVE LLRALDDPAQ VLMDDALREI ATPGPVPAGM DQSKAAAWDA
IREGQPINIV VGPPGVGKTY LISNLVKSIL SLAPDARILI AAQNHDTLVH MEEELEKELR
GRSHIVVRIE RTQTDEKDSV MRGRSRDLLR LASPQGSAAL MSSQIRQIKH ALNPVDAGEQ
AAGDRVHRDT ENLLVRSSDI TLATTSSYVI EEMIADGDQF DWTIVEEAAR ANGAEMIGAL
LLGNRRLLIG DHKQLSPFDH LERKKMYDGA RAAELLRDAR TKLGAINDLP SEVDEALQHI
GDDRDLLHDV LAISARMEEP FASIALREGE REKITGRVSR FVNTLLEQSR MHPAICQVVS
NTFYGGELIP SDRAVQRMPA VVSHGVLPNS PVVVMNLPPL SKVDRPAFET RVGRSLRNDV
EATVLLDALK QLRPIVADDG RLPTLAVLSP YKAQVDHLKR SIGRQIKQPA GTLQGFASPR
ADGNFVFTSD SFQGSEADVV LASLVRNNQL VGSRALGFMR NPQRVNVLMS RARHKLIIVS
SLDFVEDAVD GVDPDRLGGE LGFLITMVGE LRRLSLISDT EQSARIVDLD SNGAVKL
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