| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_9505 |
|---|
| Symbol | |
|---|
| ID | 7381880 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011991 |
|---|
| Strand | + |
|---|
| Start bp | 4953 |
|---|
| End bp | 5690 |
|---|
| Gene Length | 738 bp |
|---|
| Protein Length | 245 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 643653216 |
|---|
| Product | GGDEF domain-containing protein |
|---|
| Protein accession | YP_002551387 |
|---|
| Protein GI | 222109122 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGTCGTA TTGTAGAGAA GTCGATTGTA ACCGGATTGC TATCGGTGTT GGCCTCGCTG
GCGATCTCGT TCAGCATTGT GCCGTTGCTG GGTGGTCAGG TTGCGGGCGC GGGCCTGTTC
ATGACCATAT TTTGTCCGCT GGCGATATCG ATCCCGGCGT CGGCGCTGCA TTTCACCCAG
TCGGAAAAAG TGCGACGGGC AGAGGCAGCG ACGAAAGAAG CTCTGAACAA ACTGGCCGAT
GCTTATGAAA CCCTCCGTAT TCAGTCCCGC AGAGACGGGC TGACCGGCGC TCTCACGCGA
AGCGCATTCA TGGAAGATCT GGCTTTGACA AGTCAACGAG GTGGGACCGG AGCCCTGCTG
TTCCTGGACC TGGACCACTT CAAATCGATC AACGACCGGT ATGGTCATGC AACCGGTGAT
GAAGCTCTTC GCCGCACTGG GCTTGTCCTC GCCCGCTACA AGAGCCAGTC AGATGTCGCG
GGACGTCTTG GCGGTGAGGA ATTTGGATTG TTTCAGAGCG ATTTGAAGTT CGAACAAATG
CGTGATCGTT GCGAGGAGGT TCGGGAGGAA ATCGCCCGTA TCGTTTTGCA TGCACCATCT
GGTTCACAGG TGCGGATTTC CGCGAGCATA GGGGCGTGTC ATTGCGATCC CGGATTTGAT
CTATCGGACT GCCTAAAAGC CGCTGACAAA AACCTCTATC AGGCAAAAGC CCTCGGCAGA
AACAGGGTTG TCGCATAG
|
|---|
| Protein sequence | MRRIVEKSIV TGLLSVLASL AISFSIVPLL GGQVAGAGLF MTIFCPLAIS IPASALHFTQ
SEKVRRAEAA TKEALNKLAD AYETLRIQSR RDGLTGALTR SAFMEDLALT SQRGGTGALL
FLDLDHFKSI NDRYGHATGD EALRRTGLVL ARYKSQSDVA GRLGGEEFGL FQSDLKFEQM
RDRCEEVREE IARIVLHAPS GSQVRISASI GACHCDPGFD LSDCLKAADK NLYQAKALGR
NRVVA
|
|---|
| |