| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_9503 |
|---|
| Symbol | repC |
|---|
| ID | 7381878 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011991 |
|---|
| Strand | + |
|---|
| Start bp | 2674 |
|---|
| End bp | 3903 |
|---|
| Gene Length | 1230 bp |
|---|
| Protein Length | 409 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 643653214 |
|---|
| Product | replication initiation protein RepC |
|---|
| Protein accession | YP_002551385 |
|---|
| Protein GI | 222109120 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.812496 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAGGGCTG AAGAGATGCA CACGGGAAAT GTAACGACGC CCTTTGGGCG GCGGCCGATG
ACGCTTGCTC TGGTAAAACG GCAGATCGCT GACACCGAGA TCAGGTCAGG CAAGAGCGCT
GACAAATGGA TGATCTTTCG TGACGTCAAA GAAGCGCGCG AGACCTACAA GCTGCCTCCT
TATTCGATAG CGGTGCTTGA TGCACTACTG ACCTTTTATC CTGAAAAGGA ATTGCGCCAG
GACGCGCAGC TGATCGTATT TCCTTCGAAC GCTCAGCTGA TGGTTCGGGC CAACGGGATG
TCAGGAGCTA CCCTTCGTCG GCATCTGGCA ATCCTTGTCG ACGTCGGAAT GATTGTCCGC
AAGGACAGCC CCAATGGCAA ACGATACGCC CGCAAAGACG GATCAGGGGA AATCGAACGC
GCATTCGGAT TTGATCTTTC GCCGCTTTTG GCTCGATCCG AGGAGTTTGC GTTGGCCGCT
CAACAGGTGG CGACCGATCG CCGCGAATTC CTCAAGGCCA AGGAGAGCCT TACCCTGTGC
CGGCGGGACG TTCGAAAGGT TATCAGCGCC GCGATCGAGG AGGGGGCTGA AGGCGACTGG
GAAGCGGTCG AATCTGTCTA TCTGGACATT GTCCGCCGGA TTCCCCGTAC CCCGTCAGCT
TCCGACCTTG CACAAGTCCT CGACGAGTTG CAGCTTCTTT TCGACGAAGT CATCAACCGC
TTGGATTTGG TCGATAATTC TGAAGATATA AGCAGCAATG CTGCTCAGAG CGAGCGCCAC
ATACAAAATT CAAAAACCGA ATCCATCAAT GAACTTGAAC ATAGCTCTGA AAATAAGCAG
GGCGCGAAGC CGAGTGAAAC CGGTCGGCCG AAGAGGGAGC CGGTAAAGGC ATTCCCACTT
GGTATGGTGT TAAGAGCTTG CCCGCAGATA AGCGACTACG GGCCAGGCGG CCAGATCGCA
AGCTGGCGAG ACCTGATGTC GGCTGCCGTG GTCGCGCGTT CGATGCTCGG CGTCAGCCCG
AGCGCCTATC AAACCGCCTG TGAAACCCTG GGACCAGAGA ATGCAGCCGC TGTCATGGCC
TGCATTCTGG AGCGGGGGGG GCACATCAAC TCGGCCGGCG GTTACCTCCG TGCTCTGACG
CAACGGGCGG AGAAGGGCGA GTTTTCCCTC GGCCCGATGC TGATGGCCTT GACGCGCGCC
AATGCCGGGA ACGATCGACA GGCGGGATGA
|
|---|
| Protein sequence | MRAEEMHTGN VTTPFGRRPM TLALVKRQIA DTEIRSGKSA DKWMIFRDVK EARETYKLPP
YSIAVLDALL TFYPEKELRQ DAQLIVFPSN AQLMVRANGM SGATLRRHLA ILVDVGMIVR
KDSPNGKRYA RKDGSGEIER AFGFDLSPLL ARSEEFALAA QQVATDRREF LKAKESLTLC
RRDVRKVISA AIEEGAEGDW EAVESVYLDI VRRIPRTPSA SDLAQVLDEL QLLFDEVINR
LDLVDNSEDI SSNAAQSERH IQNSKTESIN ELEHSSENKQ GAKPSETGRP KREPVKAFPL
GMVLRACPQI SDYGPGGQIA SWRDLMSAAV VARSMLGVSP SAYQTACETL GPENAAAVMA
CILERGGHIN SAGGYLRALT QRAEKGEFSL GPMLMALTRA NAGNDRQAG
|
|---|
| |