Gene Avi_9501 details

Gene Information

• Locus tag: Avi_9501
• Symbol: repA
• ID: 7381876
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011991
• Strand: +
• Start bp: 279
• End bp: 1496
• Gene Length: 1218 bp
• Protein Length: 405 aa
• Translation table: 11
• GC content: 54%
• IMG OID: 643653212
• Product: replication protein A
• Protein accession: YP_002551383
• Protein GI: 222109118
• COG category: [D] Cell cycle control, cell division, chromosome partitioning
• COG ID: [COG1192] ATPases involved in chromosome partitioning
• TIGRFAM ID: [TIGR03453] plasmid partitioning protein RepA

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.222629
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCGATTA AGACCGCAAA TAGCACTGCA GCCGGAAAAA TCGAACGCGT TTCGATCGAC 
AAGACCATTG CTGACGATGC CGCAAAACTC AGCAGCAACC TTCAGGAACT ATCTGCTCGT 
CTGTTTTCGC CTGACGCACA AAAGGCGCTG CGTCGCTTCA GCAGCACGGA GGCTGCCAAG 
TTGCTCGGTG TAACAGATAG CTACGTGCGT CATTTAGCTG CTCAAGAGGA TTCGGTCACT 
TCCGAAAAAA CATCCGCTGG TCGGCGGACC TTCTCCTTGA GCGAGATCAA CACGATCCGC 
CAGCTCCTTG GGAAGACAAA GCCTGCCTAC CTCGCAGGAC GCCGGGAAGC CGATCATCTT 
CAGGTTATCG CGGTGACCAA CTTCAAGGGT GGATCAGGTA AGACGACGAC ATCCACGCAC 
CTCGCTCAAT ATCTGGCGCT GCGCGGTTAT CGTGTTCTCG CCGTTGATCT GGATCCGCAG 
GCATCAATGT CTGCAATGTT GGGATATCAG CCAGAATTCG ACGTCGGTGA AAACGAGACG 
CTGTTCGGCG CTATTCGCTA CGATGACCTT CGTCGCCCTG TTGGAGAGGT GGTTCGTGAG 
ACCTATTTCC CAGGCTTGGA TCTAATTCCC GGTAATCTTG AGCTTCACGA ATTCGAGCAC 
GATACGCCAA GAGCTCTGGC AGAGCGAAAT GGCTCTGAAA CCGACATGTT CTTCATGCGT 
GTCGGTAATG CGCTTGCTGA TCTCTCTGAA CGATATGACG TCGTCGTTAT CGACTGCCCG 
CCGACGTTGG GTTTCCTCAC GCTCTCGGCC CTATGTGCTG CAACGGCAGT ACTAATTACA 
GTGCACCCCC AAATGCTCGA CGTTGCATCC ATGAATCAGT TTCTGGCGAT GACGTCGGAT 
CTTCTGTCGG TGGTCAAAGA AGCTGGCGGG AATCTCGAGT ACGACTGGAT GCGATATCTG 
GTCACGCGGT ACGAGCCGAA CGATGGTCCA CAAGCGCAGA TTGTTGCATT CCTCCGAAGC 
CTGTTCGGTG ACCGTGTCCT CACCTCGATG ATGGTGAAGT CTACGGCAAT CTCTGATGCC 
GGCCTTTCAA AACAGACAAT CTATGAGGCT GCACGAGAAA CTATGAACAG GCAAACCTAC 
GATCGCGCCG TGGAGGCCAT GGATGGGGTC AACCTTGAAG TCGAAGCTCT TCTCAAAAGC 
TCATGGGGGC GGGCATGA 

 

Protein sequence

MAIKTANSTA AGKIERVSID KTIADDAAKL SSNLQELSAR LFSPDAQKAL RRFSSTEAAK 
LLGVTDSYVR HLAAQEDSVT SEKTSAGRRT FSLSEINTIR QLLGKTKPAY LAGRREADHL 
QVIAVTNFKG GSGKTTTSTH LAQYLALRGY RVLAVDLDPQ ASMSAMLGYQ PEFDVGENET 
LFGAIRYDDL RRPVGEVVRE TYFPGLDLIP GNLELHEFEH DTPRALAERN GSETDMFFMR 
VGNALADLSE RYDVVVIDCP PTLGFLTLSA LCAATAVLIT VHPQMLDVAS MNQFLAMTSD 
LLSVVKEAGG NLEYDWMRYL VTRYEPNDGP QAQIVAFLRS LFGDRVLTSM MVKSTAISDA 
GLSKQTIYEA ARETMNRQTY DRAVEAMDGV NLEVEALLKS SWGRA