Gene Avi_4391 details

Gene Information

• Locus tag: Avi_4391
• Symbol: rho
• ID: 7387963
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011989
• Strand: -
• Start bp: 3723135
• End bp: 3724400
• Gene Length: 1266 bp
• Protein Length: 421 aa
• Translation table: 11
• GC content: 53%
• IMG OID: 643653033
• Product: transcription termination factor Rho
• Protein accession: YP_002551204
• Protein GI: 222150247
• COG category: [K] Transcription
• COG ID: [COG1158] Transcription termination factor
• TIGRFAM ID: [TIGR00767] transcription termination factor Rho

Plasmid Coverage information

• Num covering plasmid clones: 11
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCTGAAA TGAAGCTACA AGAACTCAAG AGCAAATCGC CAACCGATCT GCTGGCCTTT 
GCGGAATCGC TTGAGGTCGA AAATGCCAGC ACGATGCGCA AACAGGAATT GATGTTTGCC 
ATTTTGAAAA TGCTGGCCAG CCAGGATGTC GAAATCATTG GTGAAGGCGT TGTCGAAGTC 
CTGCAGGATG GTTTCGGGTT CATGCGTTCG GCCAATGCCA ACTATTTGCC GGGTCCGGAC 
GACATCTACA TTTCGCCGTC GCAGATCCGT CGGTTTTCGC TGAAGACCGG CGATACCGTC 
GAAGGACCGA TCCGCGGACC CAAGGAAGGC GAGCGCTATT TCGCGCTGCT GAAAGTCAAT 
ACGATCAATT TCGAGGATCC GGAAAAGATC CGCCATAAGG TCCACTTCGA TAACCTGACG 
CCGCTCTACC CGAATGAGCG GTTCAAGATG GAACTGGAGA TTCCAACTTC CAAGGACCTT 
TCGTCCCGGG TCATCGATCT GGTTGCGCCG CTTGGCAAAG GCCAGCGCGG TTTGATCGTC 
GCGCCGCCGC GGACTGGTAA AACCGTCCTG CTCCAGAATA TCGCTCATTC CATTACCGCT 
AACCATCCGG AATGCTATCT GATCGTTCTT CTGATCGATG AACGTCCTGA AGAAGTGACG 
GATATGCAGC GCTCCGTGCG GGGCGAAGTC GTTTCATCGA CCTTTGACGA ACCGGCCGTG 
CGCCACGTTC AGGTCGCGGA AATGGTCATT GAGAAGGCCA AACGGTTGGT TGAGCACGGT 
CGTGACGTTG TCATCCTGCT CGATTCCATT ACCCGCCTTG GCCGCGCCTA TAACACTGTC 
GTTCCGTCTT CTGGCAAGGT CCTGACGGGT GGTGTGGATG CCAATGCGCT GCAACGCCCC 
AAGCGCTTCT TTGGCGCAGC GCGTAATATC GAAGAAGGTG GTTCGCTGAC GATTATTGCA 
ACGGCATTGA TCGATACCGG CAGCCGTATG GACGAAGTGA TCTTTGAAGA GTTCAAAGGT 
ACCGGCAATT CCGAAATTGT GCTTGACCGC AAGGTTGCCG ACAAGCGTAT CTTCCCGTCC 
ATGGATATTC TGAAATCCGG AACGCGCAAA GAAGACCTGC TGGTGCCGCG TCAGGATCTG 
CAGAAGATCT TTGTTCTTCG CCGGATTCTT GCTCCAATGG GAACAACCGA CGCTATCGAA 
TTCCTGATCG ACAAATTGAA ACAGACGAAG ACCAATGGCG ATTTCTTCGA ATCGATGAAT 
ACCTGA 

 

Protein sequence

MAEMKLQELK SKSPTDLLAF AESLEVENAS TMRKQELMFA ILKMLASQDV EIIGEGVVEV 
LQDGFGFMRS ANANYLPGPD DIYISPSQIR RFSLKTGDTV EGPIRGPKEG ERYFALLKVN 
TINFEDPEKI RHKVHFDNLT PLYPNERFKM ELEIPTSKDL SSRVIDLVAP LGKGQRGLIV 
APPRTGKTVL LQNIAHSITA NHPECYLIVL LIDERPEEVT DMQRSVRGEV VSSTFDEPAV 
RHVQVAEMVI EKAKRLVEHG RDVVILLDSI TRLGRAYNTV VPSSGKVLTG GVDANALQRP 
KRFFGAARNI EEGGSLTIIA TALIDTGSRM DEVIFEEFKG TGNSEIVLDR KVADKRIFPS 
MDILKSGTRK EDLLVPRQDL QKIFVLRRIL APMGTTDAIE FLIDKLKQTK TNGDFFESMN 
T