| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_4390 |
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| Symbol | trmE |
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| ID | 7387962 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | - |
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| Start bp | 3721676 |
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| End bp | 3722986 |
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| Gene Length | 1311 bp |
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| Protein Length | 436 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 643653032 |
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| Product | tRNA modification GTPase TrmE |
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| Protein accession | YP_002551203 |
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| Protein GI | 222150246 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0486] Predicted GTPase |
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| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00450] tRNA modification GTPase TrmE |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCAGGCG ATACTATTTT TGCCCTCTCC ACCGGATCGC TTCCGAGTGG TGTAGCCGTC
ATTCGGTTAT CGGGTCCTGA TGTCCAAGCC GTTCTAACAG AACTCTGTGG GATGGTTCCT
GCGCCACGCC AGGCCACGTT ACGATCGATT CGGCACCGTG ATGGACTGGT GATTGACCGC
GGACTGGTGC TTTTCTTTTC CGGCCCCTCC TCGTTCACTG GTGAGGATTG CGGGGAACTG
CACGTGCATG GAAGTCGTGC CGTGGTAAGT GTTTTGCTTT CGACACTGGC CTCGTTCTCC
GGTTGCCGGC TTGCAGAACC TGGAGAGTTT TCGAGACGGG CTTTTGAAAA CGGCAAGCTG
GATTTGGTTG AAATTGAAGG CCTAGCCGAT CTGCTGGCAG CGGAAACAGA AATGCAGCGG
CGTCAAGCTC TAGCCCAAGC CAGCGGTCAC GCGACCGGTA TCTATGAGAG CTGGCGTGAG
AAATTGATCT ATGGCCGCGC GATGATTGAG GCTGAGTTGG ATTTTGCTGA TGAAGGCGAT
ATTCCCGGCT CGGTGTCAGA CCAGGTTTGG GATACCGTTA CAGACCTCCG CACGCAGATT
TCAGCGGCTA TTGTCGATGA CCGGCGAGGT GAGATCATTC GTGACGGTTT CAATGTTGTG
ATTGCTGGGC CTCCTAACGC TGGCAAGTCG AGCCTCATCA ATGCGCTTGC CGGTCGGGAT
GTAGCGATCG TTACTCATTA TGCCGGGACG ACACGGGACA TTCTGCAATG TGATATAGAC
CTTGAAGGAT ATGTTGTTCG CCTGTATGAC ACCGCCGGTA TTCGAGAGAC CGAAGAGGTC
ATCGAACAGG AAGGCATACG GCGAGCATTG CGCAAGGTTG AAGAAGCTGA TCTCGTTCTG
TTGCTTGATG ACGTTTCATC TCCAGGCCAC ACAATTAATA TTGTTTCGGT TCCGTTTATC
ACCATAGGCA CAAAACTTGA TCTTGTGTCG GCAAGTGATG AGATTGGACG AGATCTCGTC
ATTTCGACTT ACGTTGCAGA TGATGTGGAT AGGGTCCGAA GCGTAATTCT TGATTCGATT
CGGAAACGGT TTAGTCAGAA TGAATCAGTC ATCCCAAGTC GCTTGCGACA TATTGAATGC
CTGCGAAATG CAGTTTCTTT CATTGATCAG GCTTTGGATG GGCGACTGAG CTTGGAAATC
AGGGCGGATT TCCTGCGTTT GGCCAGTGAC TCGCTGGGTC GCCTGGTTGG GCGTATCGAT
ACCGAAACGC TTTTGGGCAA AATCTTTTCG GAATTTTGTG TCGGAAAATG A
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| Protein sequence | MAGDTIFALS TGSLPSGVAV IRLSGPDVQA VLTELCGMVP APRQATLRSI RHRDGLVIDR
GLVLFFSGPS SFTGEDCGEL HVHGSRAVVS VLLSTLASFS GCRLAEPGEF SRRAFENGKL
DLVEIEGLAD LLAAETEMQR RQALAQASGH ATGIYESWRE KLIYGRAMIE AELDFADEGD
IPGSVSDQVW DTVTDLRTQI SAAIVDDRRG EIIRDGFNVV IAGPPNAGKS SLINALAGRD
VAIVTHYAGT TRDILQCDID LEGYVVRLYD TAGIRETEEV IEQEGIRRAL RKVEEADLVL
LLDDVSSPGH TINIVSVPFI TIGTKLDLVS ASDEIGRDLV ISTYVADDVD RVRSVILDSI
RKRFSQNESV IPSRLRHIEC LRNAVSFIDQ ALDGRLSLEI RADFLRLASD SLGRLVGRID
TETLLGKIFS EFCVGK
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