Gene Avi_4384 details

Gene Information

• Locus tag: Avi_4384
• Symbol: holA
• ID: 7387957
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011989
• Strand: +
• Start bp: 3716198
• End bp: 3717241
• Gene Length: 1044 bp
• Protein Length: 347 aa
• Translation table: 11
• GC content: 54%
• IMG OID: 643653027
• Product: DNA polymerase III subunit delta
• Protein accession: YP_002551198
• Protein GI: 222150241
• COG category: [L] Replication, recombination and repair
• COG ID: [COG1466] DNA polymerase III, delta subunit
• TIGRFAM ID: [TIGR01128] DNA polymerase III, delta subunit

Plasmid Coverage information

• Num covering plasmid clones: 12
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGTTGAAG TCAAGTCACA CGAATTCGAT GGCTTTCTGC AAAAATCAGT CCGCCACTAC 
AAGATGTTTC TGGTCTATGG CCCGGATGTT GGCCTTGTGG CGGAGCGCGC GGCAGCCCTT 
GCCAAATCGA CTGGCGTTGC GCTTGACGAT CCCTTCTCGG TCATTCGGCT GGATAGCGGC 
GACCTGCAGA GCGATCCGGG AAAACTATTG GATGAAATGA ACGCCCTCGG CCTATTCGGC 
GGTGATAGGC TTGTCTGGAT CCGTGGTATC GCCAATGAAA AGAGTGTGGT CGATGGGCTG 
CAAATTCTTG CGAAGGATCC GCCAGACTCC AGTTGTCTCA TCTTGGAGGC TGGGGATCTC 
AAAAAGGGAT CAGCGACCCG GAAAATAGCC GAGCCAGCCC GCAATATCGC AGTTATTCCC 
TGCTATCAGG ACGATGCACG CGCCATCAAT GCCTTGATTG ACGCGGAATT CAGCGCCGCA 
GTAAAGAGAC TGACGCCTGC GGCTCGTTCA CTGCTCAGTG AAAGTCTAGG CGGTGACCGC 
CGCGCATCTC GCAATGAGAT ATCCAAGCTG CTGCTCTATT GTCTGCATGA CGATCTCGTC 
GATGAAACCC ATGTCGAGCA GATTATTGGC GATGCCAGCG CCGTTTCGAC GGACGAAGCG 
GTAGATGCCG TGCTTGCTGG CAATTCCGAC GCCCTCTTGC ATGCCGTCCA GAAAATTGCC 
ACCTCCAAAA CACCGATGTT CCTCGTTCTT CAGGGGTGCC TTCGACAGTT TCAATTGCTG 
GACATTATGC GAAGTGAGAT GGATGAAAAA CGCCAACAGG CTGGCCAAGT CATGCAAACG 
CTTGGCCGTC AGGTACATTT CAAGCGAAAG CCACTGTTTG AAAAATCTTT AAAGAATTGG 
CCGTCCGACG CCCTTTCAGT CGAGATGCGC CGATTACAGG CAGCTATTCT CGCCAGCAGA 
CGTCAGCCAT CTTTAGAAGA CAGCCTGTCG CTTCAAACCC TTCTGGCTAT TACCCTGCAA 
TCGGCAAGGA GAAGCCGCCA GTAA 

 

Protein sequence

MVEVKSHEFD GFLQKSVRHY KMFLVYGPDV GLVAERAAAL AKSTGVALDD PFSVIRLDSG 
DLQSDPGKLL DEMNALGLFG GDRLVWIRGI ANEKSVVDGL QILAKDPPDS SCLILEAGDL 
KKGSATRKIA EPARNIAVIP CYQDDARAIN ALIDAEFSAA VKRLTPAARS LLSESLGGDR 
RASRNEISKL LLYCLHDDLV DETHVEQIIG DASAVSTDEA VDAVLAGNSD ALLHAVQKIA 
TSKTPMFLVL QGCLRQFQLL DIMRSEMDEK RQQAGQVMQT LGRQVHFKRK PLFEKSLKNW 
PSDALSVEMR RLQAAILASR RQPSLEDSLS LQTLLAITLQ SARRSRQ